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Experiment Zebrafish_40hpf_whole_embryo1, section s53.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19089.55 143084.60
2. tpma ENSDARG00000033683 4236.62 31755.34 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3851.15 28866.07 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3231.99 24225.19 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2148.67 16105.23 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2042.01 15305.77 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-co2 ENSDARG00000063908 1645.75 12335.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1523.12 11416.46 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1490.37 11170.98 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. actc1b ENSDARG00000099197 1420.86 10649.97 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. acta1b ENSDARG00000055618 1395.70 10461.39 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mylz3 ENSDARG00000017441 1374.52 10302.63 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. mt-atp6 ENSDARG00000063911 1182.79 8865.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. myhz1.3 ENSDARG00000067997 1143.64 8572.09 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
15. atp2a1 ENSDARG00000020574 1110.88 8326.54 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. mt-nd2 ENSDARG00000063899 1064.15 7976.27 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
17. mt-nd4 ENSDARG00000063917 1050.17 7871.49 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. tmsb4x ENSDARG00000077777 1039.38 7790.61 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
19. mt-co3 ENSDARG00000063912 1028.20 7706.81 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tnni2a.4 ENSDARG00000029069 981.06 7353.48 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. si:dkey-151g10.6 si:dkey-151g10.6 833.26 6245.65
22. mt-cyb ENSDARG00000063924 756.57 5670.83 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. myhz2 ENSDARG00000012944 737.79 5530.06 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
24. acta1a ENSDARG00000036371 683.47 5122.91 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. actb2 ENSDARG00000037870 677.08 5075.01 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
26. tnnt3a ENSDARG00000030270 663.49 4973.15 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
27. si:ch211-226o13.2 624.35 4679.78 si:ch211-226o13.2
28. eef1a1l1 ENSDARG00000020850 620.35 4649.80 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. mt-nd1 ENSDARG00000063895 566.83 4248.64 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. myl1 ENSDARG00000014196 556.44 4170.76 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
31. tnnt3b ENSDARG00000068457 545.66 4089.96 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. mylpfb ENSDARG00000002589 542.86 4068.98 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
33. aldoab ENSDARG00000034470 534.07 4003.09 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
34. pvalb1 ENSDARG00000037789 523.69 3925.29 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 499.72 3745.62 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 459.37 3443.18 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. myl10 ENSDARG00000062592 413.04 3095.92 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
38. zgc:66286 zgc:66286 406.65 3048.02
39. ppiaa ENSDARG00000009212 389.07 2916.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
40. rpl23 ENSDARG00000053457 386.27 2895.26 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. mt-co1 ENSDARG00000063905 377.48 2829.38 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
42. zgc:92533 zgc:92533 368.30 2760.57
43. ttna ttna 367.90 2757.57
44. rplp1 ENSDARG00000021864 314.77 2359.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. tpm3 ENSDARG00000005162 313.57 2350.35 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
46. nme2b.2 ENSDARG00000099420 305.58 2290.46 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 300.79 2254.55 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. gapdh ENSDARG00000043457 300.79 2254.55 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. hbae3 ENSDARG00000079305 299.19 2242.56 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
50. hmga1a ENSDARG00000028335 288.01 2158.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
51. rpl9 ENSDARG00000037350, ENSDARG00000112384 281.22 2107.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 276.02 2068.89 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. rpl36a ENSDARG00000058105, ENSDARG00000112656 272.43 2041.98 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
54. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 271.63 2035.99 lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
55. ttnb ttnb 271.63 2035.99
56. zgc:112425 zgc:112425 268.83 2015.00
57. rpl8 ENSDARG00000014867 262.04 1964.11 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. rpl18a ENSDARG00000025073 256.05 1919.21 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. rps23 ENSDARG00000021838 255.65 1916.21 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. cfl1l ENSDARG00000012972 254.05 1904.22 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
61. rpl21 ENSDARG00000010516, ENSDARG00000110263 253.25 1898.22 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
62. rps20 ENSDARG00000036044 240.07 1799.43 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
63. ATP5B 238.87 1790.44 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
64. rpl18 ENSDARG00000029533 238.87 1790.44 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 234.08 1754.53 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. cyt1l ENSDARG00000036832 232.88 1745.54 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. col1a1a ENSDARG00000012405, ENSDARG00000116113 232.08 1739.54 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
68. ptmab ENSDARG00000101766 231.68 1736.54 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
69. rps26l ENSDARG00000030408 230.49 1727.62 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
70. eif5a ENSDARG00000017235 229.69 1721.63 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
71. rpl19 ENSDARG00000013307 226.09 1694.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
72. rps9 ENSDARG00000011405, ENSDARG00000113248 225.69 1691.65 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
73. rpl26 ENSDARG00000102317 220.10 1649.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
74. col1a1b ENSDARG00000035809 218.90 1640.75 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
75. rps5 ENSDARG00000043453 218.50 1637.75 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
76. pfn1 ENSDARG00000088091 216.90 1625.76 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
77. rplp2 ENSDARG00000101406 216.11 1619.84 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
78. rpl11 ENSDARG00000043509 215.31 1613.84 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
79. smyhc1 ENSDARG00000099959, ENSDARG00000115916 211.71 1586.86 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
80. rps2 ENSDARG00000077291 210.11 1574.87 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
81. rpl7 ENSDARG00000007320 205.72 1541.96 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
82. tmem38a ENSDARG00000024047 205.72 1541.96 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
83. fabp3 ENSDARG00000023290 203.32 1523.97 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
84. tnni2b.1 ENSDARG00000035958 202.92 1520.97 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 201.33 1509.06 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. rps6 ENSDARG00000019778 201.33 1509.06 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
87. pvalb4 ENSDARG00000024433 199.73 1497.06 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
88. atp5g3b 198.13 1485.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
89. col2a1a ENSDARG00000069093, ENSDARG00000111202 196.93 1476.08 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
90. tpm2 ENSDARG00000104682 195.33 1464.08 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
91. hbbe3 ENSDARG00000038147, ENSDARG00000109344 192.54 1443.17 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
92. fkbp1aa ENSDARG00000022684 190.14 1425.18 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
93. rps15 ENSDARG00000070849, ENSDARG00000110979 187.74 1407.19 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
94. rpl27 ENSDARG00000015128 184.95 1386.28 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
95. rpl6 ENSDARG00000058451 182.15 1365.29 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. rpl36 ENSDARG00000100588 181.75 1362.30 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. rps19 ENSDARG00000030602 181.75 1362.30 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
98. rpl5b ENSDARG00000015862, ENSDARG00000109661 179.36 1344.38 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
99. pkmb ENSDARG00000099860 178.56 1338.39 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
100. ldb3b ENSDARG00000099974 176.96 1326.39 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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