Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s52.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21079.94 158017.97
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3619.08 27129.09 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2790.12 20915.10 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2365.85 17734.72 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 2172.67 16286.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1980.72 14847.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. si:dkey-151g10.6 si:dkey-151g10.6 1443.97 10824.19
8. mt-co3 ENSDARG00000063912 1387.72 10402.53 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1360.82 10200.88 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. mylz3 ENSDARG00000017441 1330.26 9971.80 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. mt-atp6 ENSDARG00000063911 1288.69 9660.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. tmsb4x ENSDARG00000077777 1274.02 9550.22 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. actc1b ENSDARG00000099197 1256.90 9421.89 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1239.78 9293.55 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mt-nd2 ENSDARG00000063899 1172.53 8789.44 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. acta1b ENSDARG00000055618 1141.97 8560.36 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1063.72 7973.78 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
18. mt-nd4 ENSDARG00000063917 1030.71 7726.34 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. atp2a1 ENSDARG00000020574 1009.92 7570.49 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
20. tnni2a.4 ENSDARG00000029069 930.45 6974.77 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. hbae3 ENSDARG00000079305 924.33 6928.90 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
22. myhz1.3 ENSDARG00000067997 896.21 6718.11 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. hbbe3 ENSDARG00000038147, ENSDARG00000109344 813.07 6094.88 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
24. actb2 ENSDARG00000037870 792.29 5939.11 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
25. mt-cyb ENSDARG00000063924 777.61 5829.07 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. eef1a1l1 ENSDARG00000020850 693.25 5196.69 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. mt-nd1 ENSDARG00000063895 668.80 5013.41 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. tnnt3a ENSDARG00000030270 654.13 4903.44 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
29. rpl23 ENSDARG00000053457 615.00 4610.12 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
30. acta1a ENSDARG00000036371 612.55 4591.75 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. hbbe1.1 ENSDARG00000113599 605.22 4536.81 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
32. rpl10a ENSDARG00000042905, ENSDARG00000115649 592.99 4445.13 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
33. myl1 ENSDARG00000014196 574.65 4307.65 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. myhz2 ENSDARG00000012944 495.18 3711.93 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
35. ppiaa ENSDARG00000009212 469.50 3519.43 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. aldoab ENSDARG00000034470 468.28 3510.29 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
37. zgc:92533 zgc:92533 462.17 3464.49
38. zgc:66286 zgc:66286 443.83 3327.01
39. myl10 ENSDARG00000062592 441.38 3308.64 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
40. rpl36a ENSDARG00000058105, ENSDARG00000112656 438.94 3290.35 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
41. rplp1 ENSDARG00000021864 438.94 3290.35 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 432.82 3244.47 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. rps9 ENSDARG00000011405, ENSDARG00000113248 425.49 3189.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
44. rps27a ENSDARG00000032725, ENSDARG00000114059 424.26 3180.31 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. rps23 ENSDARG00000021838 423.04 3171.16 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
46. hbae1_1 418.15 3134.51 hemoglobin, alpha embryonic 1
47. rps12 ENSDARG00000036875, ENSDARG00000115157 418.15 3134.51 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
48. rpl11 ENSDARG00000043509 414.48 3107.00 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. rps20 ENSDARG00000036044 412.04 3088.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
50. rps5 ENSDARG00000043453 392.48 2942.08 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
51. rpl8 ENSDARG00000014867 379.03 2841.26 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. rpl18 ENSDARG00000029533 375.36 2813.75 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 365.58 2740.44 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. rpl26 ENSDARG00000102317 364.35 2731.21 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
55. btf3 ENSDARG00000035400, ENSDARG00000116462 359.46 2694.56 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
56. mt-co1 ENSDARG00000063905 359.46 2694.56 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
57. rps26l ENSDARG00000030408 358.24 2685.41 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. rpl19 ENSDARG00000013307 357.02 2676.27 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 357.02 2676.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. pvalb1 ENSDARG00000037789 354.57 2657.90 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
61. rpl18a ENSDARG00000025073 349.68 2621.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. hbbe1.1_1 ENSDARG00000113599 348.46 2612.10 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
63. rps15 ENSDARG00000070849, ENSDARG00000110979 333.79 2502.13 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
64. rplp2 ENSDARG00000101406 330.12 2474.62 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
65. tnnt3b ENSDARG00000068457 324.01 2428.82 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
66. cfl1l ENSDARG00000012972 317.89 2382.94 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
67. rpl27 ENSDARG00000015128 315.45 2364.65 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. rps14 ENSDARG00000036629 315.45 2364.65 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
69. rps15a ENSDARG00000010160 305.67 2291.34 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
70. mt-nd3 ENSDARG00000063914 292.22 2190.52 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
71. rpl35a ENSDARG00000088030 290.99 2181.30 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
72. rpl7 ENSDARG00000007320 290.99 2181.30 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
73. fkbp1aa ENSDARG00000022684 288.55 2163.01 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
74. rpl36 ENSDARG00000100588 288.55 2163.01 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
75. AL935210.1 ENSDARG00000088330 287.33 2153.86 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
76. si:ch211-226o13.2 281.21 2107.99 si:ch211-226o13.2
77. faua ENSDARG00000099022 279.99 2098.84 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
78. rps19 ENSDARG00000030602 276.32 2071.33 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
79. rps27.1 ENSDARG00000023298 266.54 1998.02 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. tnni2b.1 ENSDARG00000035958 262.87 1970.51 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
81. pfn1 ENSDARG00000088091 255.54 1915.56 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
82. hspa8 ENSDARG00000068992, ENSDARG00000114726 253.09 1897.20 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
83. rpl35 ENSDARG00000018334 249.42 1869.68 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
84. mylpfb ENSDARG00000002589 246.98 1851.39 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
85. rplp2l ENSDARG00000011201 244.53 1833.03 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
86. ptmab ENSDARG00000101766 242.09 1814.74 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
87. eif5a ENSDARG00000017235 240.86 1805.52 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
88. rps2 ENSDARG00000077291 240.86 1805.52 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. rpl28 ENSDARG00000005791 239.64 1796.37 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
90. rps24 ENSDARG00000039347 238.42 1787.23 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
91. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 235.97 1768.86 lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
92. fabp3 ENSDARG00000023290 234.75 1759.72 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
93. cyt1l ENSDARG00000036832 233.53 1750.57 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
94. gapdh ENSDARG00000043457 233.53 1750.57 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
95. rpl38 ENSDARG00000006413 226.19 1695.55 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
96. atp5g1 223.75 1677.26 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
97. rps6 ENSDARG00000019778 222.52 1668.04 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
98. tpm3 ENSDARG00000005162 222.52 1668.04 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
99. rpl6 ENSDARG00000058451 221.30 1658.89 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
100. icn ENSDARG00000009978 220.08 1649.75 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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