Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s50.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12287.97 92106.52
2. tpma ENSDARG00000033683 3707.59 27790.86 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3386.01 25380.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3047.29 22841.47 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2214.83 16601.63 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2049.46 15362.07 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-co2 ENSDARG00000063908 2025.95 15185.85 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mylz3 ENSDARG00000017441 1959.40 14687.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. actc1b ENSDARG00000099197 1813.15 13590.77 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. atp2a1 ENSDARG00000020574 1509.50 11314.71 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mt-atp6 ENSDARG00000063911 1469.65 11016.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. myhz1.3 ENSDARG00000067997 1441.35 10803.88 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1441.35 10803.88 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. tmsb4x ENSDARG00000077777 1428.20 10705.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-co3 ENSDARG00000063912 1221.39 9155.13 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. acta1b ENSDARG00000055618 1205.05 9032.65 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1173.17 8793.69 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. mt-nd2 ENSDARG00000063899 1123.75 8423.26 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. mt-nd4 ENSDARG00000063917 1074.74 8055.89 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. tnni2a.4 ENSDARG00000029069 1053.22 7894.59 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. mt-cyb ENSDARG00000063924 849.19 6365.24 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. actb2 ENSDARG00000037870 838.83 6287.59 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. si:dkey-151g10.6 si:dkey-151g10.6 780.25 5848.49
24. si:ch211-226o13.2 758.73 5687.19 si:ch211-226o13.2
25. tnnt3a ENSDARG00000030270 648.75 4862.81 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. pvalb1 ENSDARG00000037789 618.06 4632.77 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
27. eef1a1l1 ENSDARG00000020850 604.12 4528.28 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-nd1 ENSDARG00000063895 570.64 4277.33 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. myl1 ENSDARG00000014196 552.31 4139.93 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
30. tnnt3b ENSDARG00000068457 540.36 4050.36 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. acta1a ENSDARG00000036371 522.03 3912.96 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. myhz2 ENSDARG00000012944 520.43 3900.97 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
33. mylpfb ENSDARG00000002589 508.48 3811.40 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. ppiaa ENSDARG00000009212 473.81 3551.52 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 449.90 3372.30 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. mt-co1 ENSDARG00000063905 433.16 3246.82 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
37. aldoab ENSDARG00000034470 427.19 3202.07 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
38. ttna ttna 408.46 3061.68
39. col1a1a ENSDARG00000012405, ENSDARG00000116113 396.10 2969.03 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
40. col1a1b ENSDARG00000035809 390.92 2930.21 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
41. zgc:66286 zgc:66286 374.58 2807.73
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 366.61 2747.99 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. zgc:92533 zgc:92533 361.04 2706.24
44. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 321.98 2413.45 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
45. zgc:112425 zgc:112425 321.19 2407.53
46. tpm3 ENSDARG00000005162 310.83 2329.88 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
47. nme2b.2 ENSDARG00000099420 306.44 2296.97 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
48. rpl23 ENSDARG00000053457 305.65 2291.05 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. hmga1a ENSDARG00000028335 301.66 2261.14 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
50. myl10 ENSDARG00000062592 297.68 2231.31 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. ptmab ENSDARG00000101766 297.28 2228.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
52. rps23 ENSDARG00000021838 297.28 2228.31 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
53. ttnb ttnb 277.35 2078.92
54. rpl8 ENSDARG00000014867 275.76 2067.00 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. hspa8 ENSDARG00000068992, ENSDARG00000114726 275.36 2064.01 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
56. ATP5B 271.77 2037.10 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
57. rpl36a ENSDARG00000058105, ENSDARG00000112656 267.79 2007.26 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 266.59 1998.27 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. btf3 ENSDARG00000035400, ENSDARG00000116462 260.22 1950.52 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
60. gapdh ENSDARG00000043457 255.04 1911.69 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. rps26l ENSDARG00000030408 234.31 1756.31 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
62. rpl9 ENSDARG00000037350, ENSDARG00000112384 232.32 1741.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
63. hbae3 ENSDARG00000079305 226.34 1696.57 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
64. rps20 ENSDARG00000036044 226.34 1696.57 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. eef2b ENSDARG00000100371, ENSDARG00000109247 218.77 1639.83 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
66. pvalb4 ENSDARG00000024433 217.58 1630.91 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
67. rpl26 ENSDARG00000102317 216.78 1624.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
68. eif5a ENSDARG00000017235 215.59 1615.99 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
69. rpl11 ENSDARG00000043509 213.59 1601.00 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
70. rpl18a ENSDARG00000025073 211.20 1583.08 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
71. rpl21 ENSDARG00000010516, ENSDARG00000110263 210.01 1574.16 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
72. hbbe3 ENSDARG00000038147, ENSDARG00000109344 208.01 1559.17 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
73. mt-nd3 ENSDARG00000063914 206.42 1547.26 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
74. smyhc1 ENSDARG00000099959, ENSDARG00000115916 202.83 1520.35 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
75. cyt1l ENSDARG00000036832 200.44 1502.43 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. rpl19 ENSDARG00000013307 199.25 1493.51 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. cfl1l ENSDARG00000012972 195.26 1463.60 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
78. col2a1a ENSDARG00000069093, ENSDARG00000111202 192.47 1442.69 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
79. rps2 ENSDARG00000077291 192.47 1442.69 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 189.28 1418.78 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
81. icn ENSDARG00000009978 188.49 1412.86 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
82. atp5g3b 184.90 1385.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
83. rplp1 ENSDARG00000021864 184.50 1382.95 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
84. rps15 ENSDARG00000070849, ENSDARG00000110979 184.10 1379.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
85. rpl27 ENSDARG00000015128 183.31 1374.03 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. rps15a ENSDARG00000010160 183.31 1374.03 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. fkbp1aa ENSDARG00000022684 181.31 1359.04 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
88. rpl36 ENSDARG00000100588 177.73 1332.20 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
89. fabp3 ENSDARG00000023290 176.93 1326.21 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
90. rplp2 ENSDARG00000101406 173.35 1299.37 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
91. rps12 ENSDARG00000036875, ENSDARG00000115157 173.35 1299.37 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
92. pkmb ENSDARG00000099860 171.75 1287.38 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
93. gch2 ENSDARG00000099101 170.95 1281.38 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
94. rpl18 ENSDARG00000029533 170.16 1275.46 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
95. tmem38a ENSDARG00000024047 168.96 1266.47 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
96. rps14 ENSDARG00000036629 164.58 1233.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
97. hbbe1.1 ENSDARG00000113599 163.78 1227.64 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
98. pfn1 ENSDARG00000088091 162.19 1215.72 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
99. eef1g ENSDARG00000056119 161.79 1212.72 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 161.39 1209.73 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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