Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s49.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24590.87 184319.93
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3165.08 23723.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2939.08 22029.76 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 1973.32 14790.94 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1863.80 13970.04 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1724.42 12925.32 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. actc1b ENSDARG00000099197 1501.40 11253.69 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1450.62 10873.07 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1362.01 10208.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. mylz3 ENSDARG00000017441 1268.42 9507.39 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1202.71 9014.87 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. atp2a1 ENSDARG00000020574 1176.83 8820.88 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. acta1b ENSDARG00000055618 1065.32 7985.07 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. tmsb4x ENSDARG00000077777 1028.48 7708.93 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-co3 ENSDARG00000063912 986.66 7395.47 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. myhz1.3 ENSDARG00000067997 967.74 7253.66 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. si:dkey-151g10.6 si:dkey-151g10.6 943.85 7074.59
18. mt-atp6 ENSDARG00000063911 919.95 6895.45 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. apoc1l apoc1l 885.11 6634.31
20. mt-nd4 ENSDARG00000063917 863.20 6470.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. mt-nd2 ENSDARG00000063899 837.32 6276.10 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. tnni2a.4 ENSDARG00000029069 818.40 6134.29 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. actb2 ENSDARG00000037870 749.70 5619.35 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
24. eef1a1l1 ENSDARG00000020850 682.00 5111.90 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. mt-cyb ENSDARG00000063924 669.06 5014.91 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. tnnt3a ENSDARG00000030270 664.08 4977.59 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
27. apoa2 ENSDARG00000015866 592.40 4440.31 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
28. acta1a ENSDARG00000036371 546.60 4097.02 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. mt-nd1 ENSDARG00000063895 532.66 3992.53 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. pvalb1 ENSDARG00000037789 509.76 3820.89 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 481.88 3611.91 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. rpl23 ENSDARG00000053457 475.91 3567.17 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. myl1 ENSDARG00000014196 470.93 3529.84 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. zgc:92533 zgc:92533 436.08 3268.62
35. apobb apobb 429.11 3216.38
36. tnnt3b ENSDARG00000068457 427.12 3201.46 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
37. si:ch211-226o13.2 414.18 3104.47 si:ch211-226o13.2
38. aldoab ENSDARG00000034470 405.22 3037.31 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. ppiaa ENSDARG00000009212 405.22 3037.31 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
40. ttna ttna 381.32 2858.17
41. actb1 ENSDARG00000037746, ENSDARG00000113649 365.39 2738.77 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. myhz2 ENSDARG00000012944 351.45 2634.28 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
43. myl10 ENSDARG00000062592 345.48 2589.53 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. apoeb ENSDARG00000040295 324.57 2432.80 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
45. rpl36a ENSDARG00000058105, ENSDARG00000112656 320.59 2402.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
46. rplp1 ENSDARG00000021864 317.60 2380.56 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. mylpfb ENSDARG00000002589 312.63 2343.31 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
48. zgc:112425 zgc:112425 300.68 2253.74
49. rplp2 ENSDARG00000101406 296.70 2223.90 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
50. rps27a ENSDARG00000032725, ENSDARG00000114059 292.71 2194.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
51. hmga1a ENSDARG00000028335 290.72 2179.08 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 290.72 2179.08 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. apoa1b ENSDARG00000101324 288.73 2164.16 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
54. gapdh ENSDARG00000043457 283.75 2126.84 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. zgc:66286 zgc:66286 283.75 2126.84
56. hbae3 ENSDARG00000079305 278.77 2089.51 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
57. ttnb ttnb 277.78 2082.09
58. btf3 ENSDARG00000035400, ENSDARG00000116462 269.81 2022.35 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
59. mt-co1 ENSDARG00000063905 264.84 1985.10 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. rps20 ENSDARG00000036044 263.84 1977.60 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
61. ATP5B 262.84 1970.11 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 262.84 1970.11 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. col1a1a ENSDARG00000012405, ENSDARG00000116113 259.86 1947.77 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
64. zgc:161979_1 zgc:161979_1 254.88 1910.44
65. rpl11 ENSDARG00000043509 249.90 1873.12 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 248.91 1865.70 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. rps5 ENSDARG00000043453 247.91 1858.20 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
68. tpm3 ENSDARG00000005162 246.91 1850.70 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
69. nme2b.2 ENSDARG00000099420 245.92 1843.28 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
70. cfl1l ENSDARG00000012972 243.93 1828.37 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
71. hbbe3 ENSDARG00000038147, ENSDARG00000109344 243.93 1828.37 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
72. hspa8 ENSDARG00000068992, ENSDARG00000114726 243.93 1828.37 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
73. rps23 ENSDARG00000021838 240.94 1805.96 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
74. rps15a ENSDARG00000010160 239.94 1798.46 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
75. rpl18a ENSDARG00000025073 236.96 1776.12 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 235.96 1768.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. rps26l ENSDARG00000030408 233.97 1753.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
78. col2a1a ENSDARG00000069093, ENSDARG00000111202 231.98 1738.80 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 229.99 1723.88 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. eif5a ENSDARG00000017235 228.99 1716.39 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. eef2b ENSDARG00000100371, ENSDARG00000109247 226.01 1694.05 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
82. rpl19 ENSDARG00000013307 226.01 1694.05 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
83. cyt1l ENSDARG00000036832 223.02 1671.64 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
84. ptmab ENSDARG00000101766 223.02 1671.64 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
85. rpl36 ENSDARG00000100588 223.02 1671.64 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. col1a1b ENSDARG00000035809 220.03 1649.23 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
87. rpl26 ENSDARG00000102317 219.04 1641.81 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
88. fkbp1aa ENSDARG00000022684 213.06 1596.98 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
89. rps14 ENSDARG00000036629 213.06 1596.98 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
90. rps27.1 ENSDARG00000023298 212.07 1589.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. rpl8 ENSDARG00000014867 210.08 1574.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
92. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 206.09 1544.74 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
93. rps19 ENSDARG00000030602 204.10 1529.82 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. pfn1 ENSDARG00000088091 198.13 1485.08 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
95. rpl27 ENSDARG00000015128 198.13 1485.08 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
96. tnni2b.1 ENSDARG00000035958 195.14 1462.66 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
97. zgc:153129 zgc:153129 192.16 1440.33
98. fabp3 ENSDARG00000023290 190.16 1425.34 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
99. rpl5b ENSDARG00000015862, ENSDARG00000109661 187.18 1403.00 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
100. rpl18 ENSDARG00000029533 186.18 1395.51 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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