Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s48.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13117.49 98329.49
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4145.62 31075.81 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. actc1b ENSDARG00000099197 2939.06 22031.37 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
4. tpma ENSDARG00000033683 2598.75 19480.39 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. ckmb ENSDARG00000040565 1856.25 13914.56 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. atp2a1 ENSDARG00000020574 1763.44 13218.85 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. myhz1.3 ENSDARG00000067997 1732.50 12986.92 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
8. ckma ENSDARG00000035327, ENSDARG00000114671 1701.56 12755.00 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1608.75 12059.29 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mt-nd4 ENSDARG00000063917 1577.81 11827.36 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1361.25 10204.01 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. eef1a1l1 ENSDARG00000020850 1051.87 7884.88 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. mt-co2 ENSDARG00000063908 1051.87 7884.88 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1051.87 7884.88 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mt-nd2 ENSDARG00000063899 990.00 7421.10 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. acta1b ENSDARG00000055618 866.25 6493.46 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. mt-atp6 ENSDARG00000063911 804.37 6029.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. mt-co3 ENSDARG00000063912 804.37 6029.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. tmsb4x ENSDARG00000077777 742.50 5565.82 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. apoc1l apoc1l 711.56 5333.90
21. mt-nd1 ENSDARG00000063895 711.56 5333.90 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. mt-cyb ENSDARG00000063924 680.62 5101.97 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. pvalb1 ENSDARG00000037789 649.69 4870.12 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. mylz3 ENSDARG00000017441 618.75 4638.19 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
25. apoa2 ENSDARG00000015866 587.81 4406.26 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. tnni2a.4 ENSDARG00000029069 556.87 4174.33 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. si:ch211-226o13.2 525.94 3942.48 si:ch211-226o13.2
28. actb1 ENSDARG00000037746, ENSDARG00000113649 495.00 3710.55 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. actb2 ENSDARG00000037870 495.00 3710.55 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
30. rps26l ENSDARG00000030408 495.00 3710.55 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
31. ppiaa ENSDARG00000009212 464.06 3478.62 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. rpl26 ENSDARG00000102317 464.06 3478.62 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
33. myhz2 ENSDARG00000012944 433.12 3246.69 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
34. ttna ttna 433.12 3246.69
35. acta1a ENSDARG00000036371 402.19 3014.84 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 402.19 3014.84 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. tnnt3b ENSDARG00000068457 402.19 3014.84 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
38. btf3 ENSDARG00000035400, ENSDARG00000116462 371.25 2782.91 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
39. hmgn2 ENSDARG00000099572 371.25 2782.91 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
40. rpl10a ENSDARG00000042905, ENSDARG00000115649 371.25 2782.91 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
41. rplp1 ENSDARG00000021864 371.25 2782.91 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
42. si:dkey-151g10.6 si:dkey-151g10.6 371.25 2782.91
43. mylpfb ENSDARG00000002589 340.31 2550.98 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
44. nme2b.2 ENSDARG00000099420 340.31 2550.98 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
45. rpl23 ENSDARG00000053457 340.31 2550.98 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. rpl36a ENSDARG00000058105, ENSDARG00000112656 340.31 2550.98 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
47. tnnt3a ENSDARG00000030270 340.31 2550.98 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
48. apoa1b ENSDARG00000101324 309.37 2319.06 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
49. apoeb ENSDARG00000040295 309.37 2319.06 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
50. hbae3 ENSDARG00000079305 309.37 2319.06 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
51. hbbe3 ENSDARG00000038147, ENSDARG00000109344 309.37 2319.06 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
52. rpl18a ENSDARG00000025073 309.37 2319.06 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
53. ttnb ttnb 309.37 2319.06
54. aldoaa ENSDARG00000011665 278.44 2087.20 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
55. aldoab ENSDARG00000034470 278.44 2087.20 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
56. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 278.44 2087.20 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
57. myl10 ENSDARG00000062592 278.44 2087.20 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
58. pnrc2 ENSDARG00000053291, ENSDARG00000112537 278.44 2087.20 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
59. ptmab ENSDARG00000101766 278.44 2087.20 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
60. rpl8 ENSDARG00000014867 278.44 2087.20 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. rps23 ENSDARG00000021838 278.44 2087.20 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. rps9 ENSDARG00000011405, ENSDARG00000113248 278.44 2087.20 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
63. zgc:112425 zgc:112425 278.44 2087.20
64. BX511252.1 BX511252.1 247.50 1855.27
65. fabp3 ENSDARG00000023290 247.50 1855.27 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
66. faua ENSDARG00000099022 247.50 1855.27 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
67. gnb2l1 247.50 1855.27 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
68. lama2 ENSDARG00000099390 247.50 1855.27 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
69. rpl39 ENSDARG00000036316, ENSDARG00000117167 247.50 1855.27 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
70. rplp2 ENSDARG00000101406 247.50 1855.27 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
71. rps10 ENSDARG00000034897 247.50 1855.27 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
72. rps12 ENSDARG00000036875, ENSDARG00000115157 247.50 1855.27 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
73. rps20 ENSDARG00000036044 247.50 1855.27 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. rps5 ENSDARG00000043453 247.50 1855.27 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
75. sparc ENSDARG00000019353 247.50 1855.27 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
76. zgc:66286 zgc:66286 247.50 1855.27
77. zgc:92533 zgc:92533 247.50 1855.27
78. RPL29 ENSDARG00000077717 216.56 1623.35 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. col1a1b ENSDARG00000035809 216.56 1623.35 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
80. eif1axb ENSDARG00000057912, ENSDARG00000111310 216.56 1623.35 eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
81. fkbp1aa ENSDARG00000022684 216.56 1623.35 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
82. gch2 ENSDARG00000099101 216.56 1623.35 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
83. icn ENSDARG00000009978 216.56 1623.35 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
84. krt8 ENSDARG00000058358, ENSDARG00000109279 216.56 1623.35 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
85. ldb3b ENSDARG00000099974 216.56 1623.35 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
86. mt-nd3 ENSDARG00000063914 216.56 1623.35 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
87. rpl14 ENSDARG00000103433 216.56 1623.35 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
88. rpl18 ENSDARG00000029533 216.56 1623.35 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
89. rpl19 ENSDARG00000013307 216.56 1623.35 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
90. rpl6 ENSDARG00000058451 216.56 1623.35 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
91. rpl9 ENSDARG00000037350, ENSDARG00000112384 216.56 1623.35 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
92. rps27.1 ENSDARG00000023298 216.56 1623.35 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
93. zgc:161979_1 zgc:161979_1 216.56 1623.35
94. col1a1a ENSDARG00000012405, ENSDARG00000116113 185.62 1391.42 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
95. col1a2 ENSDARG00000020007 185.62 1391.42 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
96. cyt1l ENSDARG00000036832 185.62 1391.42 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
97. eef1g ENSDARG00000056119 185.62 1391.42 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
98. fth1a ENSDARG00000015551 185.62 1391.42 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
99. gapdh ENSDARG00000043457 185.62 1391.42 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
100. hbbe1.1 ENSDARG00000113599 185.62 1391.42 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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