Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s45.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25598.89 191902.34
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3387.51 25394.50 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3261.72 24451.52 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2682.60 20110.14 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1806.79 13544.62 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1801.45 13504.59 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-co2 ENSDARG00000063908 1417.55 10626.68 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mylz3 ENSDARG00000017441 1259.12 9439.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. acta1b ENSDARG00000055618 1240.72 9301.07 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1235.38 9261.04 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1179.61 8842.96 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. myhz1.3 ENSDARG00000067997 1145.79 8589.43 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
13. mt-atp6 ENSDARG00000063911 1137.48 8527.13 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. actc1b ENSDARG00000099197 1055.59 7913.24 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. atp2a1 ENSDARG00000020574 935.73 7014.71 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. mt-co3 ENSDARG00000063912 931.58 6983.60 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-nd2 ENSDARG00000063899 928.61 6961.33 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
18. apoc1l apoc1l 899.54 6743.41
19. mt-nd4 ENSDARG00000063917 874.62 6556.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. tmsb4x ENSDARG00000077777 862.16 6463.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. tnni2a.4 ENSDARG00000029069 817.06 6125.10 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. apoa2 ENSDARG00000015866 811.72 6085.07 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
23. si:dkey-151g10.6 si:dkey-151g10.6 766.03 5742.55
24. mt-cyb ENSDARG00000063924 640.24 4799.57 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. acta1a ENSDARG00000036371 624.81 4683.89 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. tnnt3a ENSDARG00000030270 622.44 4666.13 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
27. actb2 ENSDARG00000037870 604.04 4528.19 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
28. eef1a1l1 ENSDARG00000020850 574.97 4310.27 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. apobb apobb 563.70 4225.78
30. myl1 ENSDARG00000014196 495.46 3714.22 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
31. apoeb ENSDARG00000040295 494.27 3705.30 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
32. pvalb1 ENSDARG00000037789 490.71 3678.61 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
33. mt-nd1 ENSDARG00000063895 468.16 3509.57 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
34. tnnt3b ENSDARG00000068457 466.98 3500.72 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
35. si:ch211-226o13.2 459.26 3442.85 si:ch211-226o13.2
36. apoa1b ENSDARG00000101324 426.04 3193.81 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
37. aldoab ENSDARG00000034470 410.61 3078.14 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
38. actb1 ENSDARG00000037746, ENSDARG00000113649 402.89 3020.27 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 389.84 2922.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. mylpfb ENSDARG00000002589 382.13 2864.64 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
41. ttna ttna 382.13 2864.64
42. ppiaa ENSDARG00000009212 379.75 2846.80 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
43. zgc:92533 zgc:92533 379.16 2842.38
44. rpl23 ENSDARG00000053457 375.60 2815.69 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. hbae3 ENSDARG00000079305 354.24 2655.56 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
46. zgc:161979_1 zgc:161979_1 350.68 2628.88
47. mt-co1 ENSDARG00000063905 310.33 2326.39 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
48. zgc:66286 zgc:66286 303.80 2277.44
49. nme2b.2 ENSDARG00000099420 300.84 2255.25 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
50. myl10 ENSDARG00000062592 300.24 2250.75 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 299.65 2246.33 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 277.10 2077.28 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
53. ttnb ttnb 268.20 2010.56
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 264.64 1983.88 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 261.67 1961.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. hbbe3 ENSDARG00000038147, ENSDARG00000109344 261.08 1957.19 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 259.89 1948.27 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. gapdh ENSDARG00000043457 258.11 1934.92 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
59. rplp1 ENSDARG00000021864 254.55 1908.24 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. rpl8 ENSDARG00000014867 250.99 1881.55 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. hmga1a ENSDARG00000028335 242.69 1819.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
62. rps23 ENSDARG00000021838 238.53 1788.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
63. tpm3 ENSDARG00000005162 234.38 1757.03 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
64. zgc:112425 zgc:112425 232.01 1739.27
65. rpl18a ENSDARG00000025073 231.41 1734.77 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
66. rps20 ENSDARG00000036044 229.63 1721.42 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
67. hbbe1.1 ENSDARG00000113599 220.73 1654.70 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
68. rplp2 ENSDARG00000101406 219.54 1645.78 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
69. rbp4 ENSDARG00000101199 217.17 1628.02 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
70. rpl11 ENSDARG00000043509 216.58 1623.59 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. rpl21 ENSDARG00000010516, ENSDARG00000110263 216.58 1623.59 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
72. apoa4 apoa4 214.20 1605.75
73. ptmab ENSDARG00000101766 212.42 1592.41 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
74. apoa1a ENSDARG00000012076, ENSDARG00000110395 211.83 1587.99 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
75. rpl26 ENSDARG00000102317 210.64 1579.06 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
76. rps27a ENSDARG00000032725, ENSDARG00000114059 210.05 1574.64 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
77. cfl1l ENSDARG00000012972 206.49 1547.95 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
78. ATP5B 204.12 1530.19 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
79. cyt1l ENSDARG00000036832 204.12 1530.19 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
80. rps5 ENSDARG00000043453 204.12 1530.19 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
81. zgc:153129 zgc:153129 199.37 1494.58
82. col1a1a ENSDARG00000012405, ENSDARG00000116113 198.78 1490.16 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
83. rps9 ENSDARG00000011405, ENSDARG00000113248 198.18 1485.66 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
84. rpl27 ENSDARG00000015128 197.59 1481.24 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
85. rpl18 ENSDARG00000029533 195.81 1467.89 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. eif5a ENSDARG00000017235 194.62 1458.97 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
87. zgc:161979 zgc:161979 189.28 1418.94
88. rps2 ENSDARG00000077291 185.72 1392.25 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. rps12 ENSDARG00000036875, ENSDARG00000115157 183.94 1378.91 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
90. rps26l ENSDARG00000030408 181.57 1361.14 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 180.98 1356.72 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. pkmb ENSDARG00000099860 178.60 1338.88 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
93. col1a1b ENSDARG00000035809 178.01 1334.45 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
94. fkbp1aa ENSDARG00000022684 178.01 1334.45 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
95. rpl19 ENSDARG00000013307 178.01 1334.45 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
96. rps6 ENSDARG00000019778 175.64 1316.69 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
97. rpl36 ENSDARG00000100588 172.08 1290.00 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
98. tnni2b.1 ENSDARG00000035958 170.89 1281.08 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
99. fabp3 ENSDARG00000023290 168.52 1263.31 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
100. pfn1 ENSDARG00000088091 168.52 1263.31 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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