Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s44.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 7941.93 59537.64 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tpma ENSDARG00000033683 6957.51 52157.82 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3438.68 25778.48 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
4. atp2a1 ENSDARG00000020574 2428.55 18205.92 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
5. acta1b ENSDARG00000055618 2362.01 17707.10 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
6. tmsb4x ENSDARG00000077777 2310.60 17321.69 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. AC024175.4 AC024175.4 2138.21 16029.35
8. mt-nd4 ENSDARG00000063917 1814.61 13603.44 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. actc1b ENSDARG00000099197 1737.49 13025.31 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. apobb apobb 1618.03 12129.76
11. aldoab ENSDARG00000034470 1425.98 10690.03 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
12. apoa2 ENSDARG00000015866 1247.54 9352.34 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1165.89 8740.24 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. mt-nd2 ENSDARG00000063899 1035.84 7765.30 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
15. apoeb ENSDARG00000040295 970.82 7277.87 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
16. myhz1.3 ENSDARG00000067997 970.82 7277.87 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. mt-co2 ENSDARG00000063908 943.60 7073.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 943.60 7073.81 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
19. ckmb ENSDARG00000040565 849.84 6370.93 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
20. apoc1l apoc1l 771.21 5781.47
21. tnni2a.4 ENSDARG00000029069 748.53 5611.45 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. ckma ENSDARG00000035327, ENSDARG00000114671 703.16 5271.32 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
23. mt-nd1 ENSDARG00000063895 688.04 5157.98 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. gapdh ENSDARG00000043457 650.23 4874.53 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
25. apoa1a ENSDARG00000012076, ENSDARG00000110395 647.21 4851.89 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
26. apoa1b ENSDARG00000101324 621.50 4659.15 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. zgc:161979_1 zgc:161979_1 583.70 4375.78
28. mt-co3 ENSDARG00000063912 544.38 4081.01 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
29. eef1a1l1 ENSDARG00000020850 515.65 3865.63 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. tnnt3b ENSDARG00000068457 509.60 3820.28 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. col1a1b ENSDARG00000035809 502.04 3763.60 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
32. actb2 ENSDARG00000037870 494.48 3706.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. rbp4 ENSDARG00000101199 488.43 3661.57 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
34. mylpfb ENSDARG00000002589 459.70 3446.20 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
35. pvalb4 ENSDARG00000024433 455.16 3412.16 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
36. pvalb1 ENSDARG00000037789 429.46 3219.50 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
37. acta1a ENSDARG00000036371 427.94 3208.10 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
38. mt-cyb ENSDARG00000063924 424.92 3185.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 409.80 3072.12 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
40. si:dkey-151g10.6 si:dkey-151g10.6 387.12 2902.09
41. ldb3b ENSDARG00000099974 381.07 2856.74 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
42. zgc:161979 zgc:161979 379.56 2845.42
43. ttna ttna 373.51 2800.06
44. zgc:66286 zgc:66286 358.38 2686.64
45. apoa4 apoa4 355.36 2664.00
46. mt-atp6 ENSDARG00000063911 352.34 2641.36 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
47. cfl1l ENSDARG00000012972 341.75 2561.97 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
48. myl10 ENSDARG00000062592 340.24 2550.65 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
49. zgc:112425 zgc:112425 340.24 2550.65
50. si:ch211-226o13.2 332.68 2493.98 si:ch211-226o13.2
51. rpl26 ENSDARG00000102317 322.09 2414.59 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. hbbe3 ENSDARG00000038147, ENSDARG00000109344 316.04 2369.23 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
53. col1a1a ENSDARG00000012405, ENSDARG00000116113 306.97 2301.24 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
54. si:dkeyp-86f7.3 si:dkeyp-86f7.3 293.36 2199.21
55. ppiaa ENSDARG00000009212 288.83 2165.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
56. APOA4 APOA4 285.80 2142.53
57. rps27a ENSDARG00000032725, ENSDARG00000114059 276.73 2074.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. hbae3 ENSDARG00000079305 273.70 2051.83 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
59. pkmb ENSDARG00000099860 273.70 2051.83 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
60. atp5g1 264.63 1983.83 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
61. gch2 ENSDARG00000099101 264.63 1983.83 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
62. ATP5B 263.12 1972.51 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
63. tnni2b.1 ENSDARG00000035958 260.09 1949.80 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
64. rps26l ENSDARG00000030408 251.02 1881.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
65. si:dkeyp-113d7.4 si:dkeyp-113d7.4 248.00 1859.16
66. smyhc1 ENSDARG00000099959, ENSDARG00000115916 248.00 1859.16 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
67. hbbe1.1 ENSDARG00000113599 244.97 1836.45 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
68. atp5a1 241.95 1813.81 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
69. casq2 ENSDARG00000008982 241.95 1813.81 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
70. gamt ENSDARG00000070844, ENSDARG00000109945 241.95 1813.81 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
71. ttnb ttnb 237.41 1779.77
72. cox4i1 ENSDARG00000032970 235.90 1768.45 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
73. fabp3 ENSDARG00000023290 226.83 1700.46 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
74. rpl14 ENSDARG00000103433 216.24 1621.07 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
75. cyt1l ENSDARG00000036832 214.73 1609.75 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. APOB APOB 213.22 1598.43
77. col1a2 ENSDARG00000020007 211.70 1587.03 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
78. tnw 210.19 1575.71 tenascin W, transcript variant X2
79. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 208.68 1564.40 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
80. hmgn2 ENSDARG00000099572 208.68 1564.40 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
81. rpl27 ENSDARG00000015128 208.68 1564.40 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. pgam2 ENSDARG00000057571 205.66 1541.76 phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
83. rpl18a ENSDARG00000025073 204.14 1530.36 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
84. rpl9 ENSDARG00000037350, ENSDARG00000112384 201.12 1507.72 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
85. icn ENSDARG00000009978 198.09 1485.01 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
86. rpl8 ENSDARG00000014867 195.07 1462.37 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
87. tmem38a ENSDARG00000024047 195.07 1462.37 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
88. aldoaa ENSDARG00000011665 192.05 1439.73 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
89. rpl36 ENSDARG00000100588 192.05 1439.73 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
90. rps15a ENSDARG00000010160 190.53 1428.33 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
91. actn3a ENSDARG00000013755, ENSDARG00000111128 187.51 1405.69 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
92. ldha ENSDARG00000101251 173.90 1303.66 lactate dehydrogenase A4 [Source:ZFIN;Acc:ZDB-GENE-991026-5]
93. col18a1 col18a1 172.39 1292.34
94. h3f3d ENSDARG00000045248 172.39 1292.34 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
95. mylz3 ENSDARG00000017441 172.39 1292.34 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
96. pla2g12b ENSDARG00000015662 172.39 1292.34 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
97. si:ch1073-429i10.3 172.39 1292.34 si:ch1073-429i10.3, transcript variant X2
98. apoc2 ENSDARG00000092155 170.88 1281.02 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
99. hmga1a ENSDARG00000028335 169.36 1269.63 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
100. pygma ENSDARG00000055518 167.85 1258.31 phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA