Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s43.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22714.86 170262.46
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3330.56 24964.69 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3108.35 23299.08 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2549.57 19110.66 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2129.84 15964.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2109.70 15813.56 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-co2 ENSDARG00000063908 1834.21 13748.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. actc1b ENSDARG00000099197 1583.41 11868.67 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mylz3 ENSDARG00000017441 1481.40 11104.04 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1403.44 10519.68 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. atp2a1 ENSDARG00000020574 1358.60 10183.58 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1344.96 10081.34 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
13. acta1b ENSDARG00000055618 1250.75 9375.17 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. myhz1.3 ENSDARG00000067997 1235.80 9263.11 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
15. mt-co3 ENSDARG00000063912 1215.66 9112.15 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. tmsb4x ENSDARG00000077777 1196.17 8966.06 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. mt-atp6 ENSDARG00000063911 1155.24 8659.27 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. mt-nd4 ENSDARG00000063917 955.12 7159.24 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. tnni2a.4 ENSDARG00000029069 898.59 6735.51 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
20. pvalb1 ENSDARG00000037789 847.26 6350.76 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. si:dkey-151g10.6 si:dkey-151g10.6 831.02 6229.03
22. mt-nd2 ENSDARG00000063899 825.82 6190.05 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. tnnt3a ENSDARG00000030270 810.22 6073.12 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. mt-cyb ENSDARG00000063924 706.92 5298.82 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. actb2 ENSDARG00000037870 665.98 4991.95 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
26. acta1a ENSDARG00000036371 610.75 4577.96 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. eef1a1l1 ENSDARG00000020850 584.76 4383.15 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. mt-nd1 ENSDARG00000063895 560.72 4202.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. myl1 ENSDARG00000014196 552.28 4139.69 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
30. si:ch211-226o13.2 532.79 3993.60 si:ch211-226o13.2
31. tnnt3b ENSDARG00000068457 503.55 3774.43 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. mylpfb ENSDARG00000002589 465.86 3491.92 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
33. apoc1l apoc1l 457.42 3428.66
34. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 454.17 3404.30 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
35. aldoab ENSDARG00000034470 447.67 3355.57 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
36. ttna ttna 435.97 3267.88
37. apoa2 ENSDARG00000015866 376.85 2824.73 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
38. mt-co1 ENSDARG00000063905 369.05 2766.27 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
39. apobb apobb 367.75 2756.52
40. ttnb ttnb 351.51 2634.79
41. actb1 ENSDARG00000037746, ENSDARG00000113649 344.36 2581.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 343.06 2571.46 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. ppiaa ENSDARG00000009212 342.41 2566.58 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. rpl23 ENSDARG00000053457 337.86 2532.48 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. zgc:66286 zgc:66286 325.52 2439.98
46. myl10 ENSDARG00000062592 319.02 2391.26 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
47. apoa1b ENSDARG00000101324 314.47 2357.15 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
48. hbae3 ENSDARG00000079305 313.82 2352.28 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
49. zgc:92533 zgc:92533 311.22 2332.79
50. gapdh ENSDARG00000043457 306.68 2298.76 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
51. rpl36a ENSDARG00000058105, ENSDARG00000112656 274.84 2060.10 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
52. rpl8 ENSDARG00000014867 268.99 2016.25 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 259.25 1943.25 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. rplp1 ENSDARG00000021864 258.60 1938.37 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. rps23 ENSDARG00000021838 258.60 1938.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. nme2b.2 ENSDARG00000099420 256.65 1923.76 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
57. rplp2 ENSDARG00000101406 255.35 1914.01 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
58. zgc:112425 zgc:112425 253.40 1899.40
59. zgc:161979_1 zgc:161979_1 253.40 1899.40
60. col1a1b ENSDARG00000035809 252.75 1894.52 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
61. rpl26 ENSDARG00000102317 251.45 1884.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. hmga1a ENSDARG00000028335 250.80 1879.91 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
63. rps26l ENSDARG00000030408 244.30 1831.19 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 244.30 1831.19 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. apoeb ENSDARG00000040295 243.00 1821.44 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
66. ATP5B 240.40 1801.95 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
67. col1a1a ENSDARG00000012405, ENSDARG00000116113 238.45 1787.34 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
68. rpl11 ENSDARG00000043509 236.50 1772.72 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 232.61 1743.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. rpl19 ENSDARG00000013307 230.01 1724.07 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. ptmab ENSDARG00000101766 225.46 1689.97 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
72. cyt1l ENSDARG00000036832 224.16 1680.22 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
73. tpm3 ENSDARG00000005162 222.86 1670.48 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
74. eef2b ENSDARG00000100371, ENSDARG00000109247 222.21 1665.61 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
75. rps20 ENSDARG00000036044 217.01 1626.63 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. eif5a ENSDARG00000017235 215.71 1616.88 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
77. hspa8 ENSDARG00000068992, ENSDARG00000114726 214.41 1607.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
78. hbbe3 ENSDARG00000038147, ENSDARG00000109344 213.11 1597.40 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
79. mt-nd3 ENSDARG00000063914 213.11 1597.40 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
80. rps15 ENSDARG00000070849, ENSDARG00000110979 209.87 1573.11 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 209.87 1573.11 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. si:dkeyp-113d7.4 si:dkeyp-113d7.4 206.62 1548.75
83. col2a1a ENSDARG00000069093, ENSDARG00000111202 203.37 1524.39 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
84. rps5 ENSDARG00000043453 202.72 1519.52 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
85. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 200.12 1500.03 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
86. rpl9 ENSDARG00000037350, ENSDARG00000112384 192.32 1441.56 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
87. rpl27 ENSDARG00000015128 188.42 1412.33 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
88. zgc:153129 zgc:153129 187.77 1407.46
89. rps12 ENSDARG00000036875, ENSDARG00000115157 187.12 1402.58 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
90. rps14 ENSDARG00000036629 186.47 1397.71 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
91. pkmb ENSDARG00000099860 185.83 1392.92 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
92. rps2 ENSDARG00000077291 183.23 1373.43 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
93. hbbe1.1 ENSDARG00000113599 181.28 1358.81 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
94. atp5g3b 179.98 1349.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. tnni2b.1 ENSDARG00000035958 178.03 1334.45 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
96. faua ENSDARG00000099022 177.38 1329.58 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. rpl36 ENSDARG00000100588 176.73 1324.70 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
98. rpl18 ENSDARG00000029533 174.78 1310.09 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
99. fkbp1aa ENSDARG00000022684 174.13 1305.22 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. rpl18a ENSDARG00000025073 173.48 1300.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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