Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s42.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25062.17 187852.36
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3540.18 26535.26 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3177.50 23816.81 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2751.92 20626.89 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1917.54 14372.83 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1798.04 13477.13 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1703.70 12770.01 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
8. mylz3 ENSDARG00000017441 1652.69 12387.66 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1418.59 10632.98 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1231.31 9229.23 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. mt-co3 ENSDARG00000063912 1226.41 9192.50 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mt-atp6 ENSDARG00000063911 1221.52 9155.85 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. atp2a1 ENSDARG00000020574 1185.88 8888.71 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mt-nd4 ENSDARG00000063917 1148.85 8611.15 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. tmsb4x ENSDARG00000077777 1129.28 8464.47 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. myhz1.3 ENSDARG00000067997 1104.82 8281.13 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
17. actc1b ENSDARG00000099197 1078.96 8087.30 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. mt-nd2 ENSDARG00000063899 1037.04 7773.09 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. acta1b ENSDARG00000055618 960.87 7202.16 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
20. tnni2a.4 ENSDARG00000029069 810.62 6075.97 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. mt-cyb ENSDARG00000063924 798.74 5986.92 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tnnt3a ENSDARG00000030270 758.21 5683.13 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. pvalb1 ENSDARG00000037789 675.05 5059.81 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
24. actb2 ENSDARG00000037870 626.83 4698.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
25. si:dkey-151g10.6 si:dkey-151g10.6 585.60 4389.34
26. myl1 ENSDARG00000014196 568.13 4258.39 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
27. eef1a1l1 ENSDARG00000020850 549.96 4122.20 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
28. si:ch211-226o13.2 535.29 4012.24 si:ch211-226o13.2
29. ttna ttna 530.40 3975.59
30. mt-nd1 ENSDARG00000063895 522.71 3917.95 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. acta1a ENSDARG00000036371 470.30 3525.11 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. tnnt3b ENSDARG00000068457 465.41 3488.46 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
33. ttnb ttnb 438.15 3284.13
34. aldoab ENSDARG00000034470 410.20 3074.64 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
35. apoc1l apoc1l 408.11 3058.97
36. mt-co1 ENSDARG00000063905 408.11 3058.97 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
37. hbae3 ENSDARG00000079305 391.33 2933.20 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
38. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 390.64 2928.02 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
39. apoa2 ENSDARG00000015866 378.06 2833.73 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
40. mylpfb ENSDARG00000002589 376.66 2823.24 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 371.77 2786.59 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. apobb apobb 364.08 2728.95
43. zgc:92533 zgc:92533 348.71 2613.74
44. zgc:66286 zgc:66286 336.83 2524.69
45. ppiaa ENSDARG00000009212 306.78 2299.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
46. hbbe3 ENSDARG00000038147, ENSDARG00000109344 299.09 2241.82 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
47. tpm3 ENSDARG00000005162 298.39 2236.57 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
48. rpl10a ENSDARG00000042905, ENSDARG00000115649 297.69 2231.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
49. col1a1b ENSDARG00000035809 294.90 2210.41 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
50. rpl23 ENSDARG00000053457 290.71 2179.00 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
51. myl10 ENSDARG00000062592 290.01 2173.76 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
52. rps23 ENSDARG00000021838 286.51 2147.52 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
53. col1a1a ENSDARG00000012405, ENSDARG00000116113 276.73 2074.22 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
54. gapdh ENSDARG00000043457 271.84 2037.56 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. apoa1b ENSDARG00000101324 270.44 2027.07 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
56. zgc:112425 zgc:112425 252.27 1890.88
57. apoeb ENSDARG00000040295 250.87 1880.38 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
58. hbbe1.1 ENSDARG00000113599 248.08 1859.47 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 248.08 1859.47 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. nme2b.2 ENSDARG00000099420 229.91 1723.28 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
61. zgc:161979_1 zgc:161979_1 226.41 1697.05
62. eef2b ENSDARG00000100371, ENSDARG00000109247 222.92 1670.89 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
63. ATP5B 220.82 1655.15 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
64. rpl8 ENSDARG00000014867 218.03 1634.23 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
65. rps20 ENSDARG00000036044 214.54 1608.07 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
66. btf3 ENSDARG00000035400, ENSDARG00000116462 212.44 1592.33 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 212.44 1592.33 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 212.44 1592.33 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
69. rplp1 ENSDARG00000021864 206.85 1550.43 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
70. hspa8 ENSDARG00000068992, ENSDARG00000114726 206.15 1545.19 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
71. mt-nd3 ENSDARG00000063914 204.75 1534.69 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 204.05 1529.45 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. hmga1a ENSDARG00000028335 203.35 1524.20 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
74. rpl11 ENSDARG00000043509 201.26 1508.54 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
75. si:dkeyp-113d7.4 si:dkeyp-113d7.4 201.26 1508.54
76. rpl21 ENSDARG00000010516, ENSDARG00000110263 199.86 1498.04 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
77. cyt1l ENSDARG00000036832 196.37 1471.88 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
78. rpl26 ENSDARG00000102317 196.37 1471.88 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
79. ptmab ENSDARG00000101766 190.08 1424.74 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 187.98 1409.00 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. col2a1a ENSDARG00000069093, ENSDARG00000111202 183.79 1377.59 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
82. faua ENSDARG00000099022 183.79 1377.59 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
83. pkmb ENSDARG00000099860 183.09 1372.34 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
84. rplp2 ENSDARG00000101406 182.39 1367.10 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. rps26l ENSDARG00000030408 181.69 1361.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
86. zgc:153129 zgc:153129 175.40 1314.70
87. rps9 ENSDARG00000011405, ENSDARG00000113248 174.00 1304.21 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. CR354540.2 ENSDARG00000117517 172.61 1293.79
89. col11a1a ENSDARG00000026165, ENSDARG00000115341 172.61 1293.79 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
90. rpl19 ENSDARG00000013307 166.32 1246.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
91. rpl27 ENSDARG00000015128 164.22 1230.90 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
92. rpl18a ENSDARG00000025073 162.82 1220.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
93. rps2 ENSDARG00000077291 162.82 1220.41 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
94. eif5a ENSDARG00000017235 160.03 1199.50 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
95. tpm2 ENSDARG00000104682 155.83 1168.02 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
96. hbae1_1 154.44 1157.60 hemoglobin, alpha embryonic 1
97. cfl1l ENSDARG00000012972 153.74 1152.35 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
98. rpl36 ENSDARG00000100588 153.04 1147.10 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
99. rps15a ENSDARG00000010160 153.04 1147.10 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. fkbp1aa ENSDARG00000022684 150.24 1126.12 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA