Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s41.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22055.87 165329.35
2. tpma ENSDARG00000033683 3697.89 27719.14 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3143.55 23563.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2800.81 20994.69 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 2548.98 19106.99 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2164.71 16226.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1732.03 12983.18 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. actc1b ENSDARG00000099197 1591.73 11931.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. atp2a1 ENSDARG00000020574 1503.75 11272.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
10. mt-co2 ENSDARG00000063908 1499.17 11237.68 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1429.84 10717.99 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. acta1b ENSDARG00000055618 1391.25 10428.72 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1329.11 9962.92 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. myhz1.3 ENSDARG00000067997 1130.92 8477.30 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
15. mt-atp6 ENSDARG00000063911 1114.89 8357.14 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. pvalb1 ENSDARG00000037789 1042.29 7812.94 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
17. mt-nd4 ENSDARG00000063917 953.33 7146.10 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. mt-co3 ENSDARG00000063912 936.33 7018.67 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-nd2 ENSDARG00000063899 902.97 6768.60 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
20. tmsb4x ENSDARG00000077777 889.23 6665.61 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. tnni2a.4 ENSDARG00000029069 844.10 6327.32 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. tnnt3a ENSDARG00000030270 723.10 5420.31 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. actb2 ENSDARG00000037870 667.17 5001.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
24. apoc1l apoc1l 657.36 4927.53
25. acta1a ENSDARG00000036371 650.82 4878.50 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. si:dkey-151g10.6 si:dkey-151g10.6 645.59 4839.30
27. mt-cyb ENSDARG00000063924 641.99 4812.31 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. si:ch211-226o13.2 619.10 4640.73 si:ch211-226o13.2
29. tnnt3b ENSDARG00000068457 601.43 4508.28 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
30. eef1a1l1 ENSDARG00000020850 593.91 4451.91 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. mylpfb ENSDARG00000002589 504.30 3780.20 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
32. myl1 ENSDARG00000014196 495.80 3716.48 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. ttna ttna 488.93 3664.99
34. apoa2 ENSDARG00000015866 484.03 3628.26 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
35. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 478.47 3586.58 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
36. mt-nd1 ENSDARG00000063895 476.83 3574.29 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. apobb apobb 427.45 3204.14
38. aldoab ENSDARG00000034470 409.46 3069.29 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. apoa1b ENSDARG00000101324 408.15 3059.47 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 381.01 2856.03 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. ttnb ttnb 377.41 2829.04
42. zgc:92533 zgc:92533 332.93 2495.62
43. ppiaa ENSDARG00000009212 332.28 2490.75 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. zgc:161979_1 zgc:161979_1 328.03 2458.89
45. gapdh ENSDARG00000043457 327.04 2451.47 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
46. apoeb ENSDARG00000040295 322.14 2414.74 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 318.21 2385.28 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. zgc:66286 zgc:66286 297.94 2233.34
49. rpl23 ENSDARG00000053457 296.96 2225.99 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
50. nme2b.2 ENSDARG00000099420 296.63 2223.52 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
51. myl10 ENSDARG00000062592 290.09 2174.50 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
52. hbae3 ENSDARG00000079305 286.49 2147.51 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
53. mt-co1 ENSDARG00000063905 278.31 2086.19 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
54. btf3 ENSDARG00000035400, ENSDARG00000116462 268.18 2010.26 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. col1a1b ENSDARG00000035809 265.89 1993.09 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
56. col1a1a ENSDARG00000012405, ENSDARG00000116113 261.64 1961.24 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
57. hmga1a ENSDARG00000028335 260.00 1948.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 257.38 1929.30 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. ATP5B 254.77 1909.74 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
60. tpm3 ENSDARG00000005162 253.13 1897.45 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
61. rplp1 ENSDARG00000021864 243.98 1828.86 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. pkmb ENSDARG00000099860 236.45 1772.41 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
63. zgc:112425 zgc:112425 228.28 1711.17
64. eef2b ENSDARG00000100371, ENSDARG00000109247 224.03 1679.31 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
65. hspa8 ENSDARG00000068992, ENSDARG00000114726 224.03 1679.31 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
66. rpl8 ENSDARG00000014867 218.47 1637.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
67. col2a1a ENSDARG00000069093, ENSDARG00000111202 216.83 1625.34 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
68. hbbe3 ENSDARG00000038147, ENSDARG00000109344 215.20 1613.13 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
69. rpl26 ENSDARG00000102317 213.56 1600.83 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
70. ptmab ENSDARG00000101766 211.60 1586.14 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
71. rplp2 ENSDARG00000101406 210.94 1581.19 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 210.94 1581.19 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. rpl18a ENSDARG00000025073 208.00 1559.15 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
74. rps23 ENSDARG00000021838 202.77 1519.95 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. rps20 ENSDARG00000036044 195.90 1468.45 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. rpl21 ENSDARG00000010516, ENSDARG00000110263 192.63 1443.94 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
77. rpl11 ENSDARG00000043509 191.98 1439.07 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
78. cyt1l ENSDARG00000036832 190.34 1426.78 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
79. eif5a ENSDARG00000017235 187.07 1402.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
80. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 186.42 1397.39 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 185.43 1389.97 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. cfl1l ENSDARG00000012972 182.49 1367.93 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
83. hbbe1.1 ENSDARG00000113599 182.49 1367.93 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
84. rps26l ENSDARG00000030408 172.68 1294.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
85. rps2 ENSDARG00000077291 172.35 1291.92 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
86. fkbp1aa ENSDARG00000022684 172.03 1289.53 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
87. rpl9 ENSDARG00000037350, ENSDARG00000112384 172.03 1289.53 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
88. CR354540.2 ENSDARG00000117517 170.06 1274.76
89. rps14 ENSDARG00000036629 168.10 1260.07 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
90. pvalb4 ENSDARG00000024433 166.79 1250.25 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
91. atp5g1 165.48 1240.43 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
92. rpl18 ENSDARG00000029533 165.16 1238.03 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rps5 ENSDARG00000043453 164.83 1235.55 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
94. zgc:153129 zgc:153129 164.83 1235.55
95. apoa4 apoa4 164.18 1230.68
96. smyhc1 ENSDARG00000099959, ENSDARG00000115916 161.56 1211.04 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
97. mt-nd3 ENSDARG00000063914 160.91 1206.17 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
98. tmem38a ENSDARG00000024047 159.60 1196.35 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
99. rpsa ENSDARG00000019181 158.29 1186.53 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
100. apoa1a ENSDARG00000012076, ENSDARG00000110395 156.33 1171.84 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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