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Experiment Zebrafish_40hpf_whole_embryo1, section s40.

Sample reads: 133,376. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10943.10 82046.93
2. tpma ENSDARG00000033683 4036.07 30260.82 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3937.97 29525.30 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3413.06 25589.74 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2405.56 18035.91 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2042.91 15316.91 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-co2 ENSDARG00000063908 1698.86 12737.36 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1674.22 12552.62 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. mylz3 ENSDARG00000017441 1585.42 11886.84 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1484.99 11133.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1370.62 10276.35 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-nd4 ENSDARG00000063917 1246.02 9342.15 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. atp2a1 ENSDARG00000020574 1109.79 8320.76 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mt-co3 ENSDARG00000063912 1083.29 8122.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. mt-atp6 ENSDARG00000063911 1080.50 8101.15 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. actc1b ENSDARG00000099197 1071.20 8031.42 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
17. tnni2a.4 ENSDARG00000029069 1062.37 7965.22 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
18. apoc1l apoc1l 1027.03 7700.26
19. mt-nd2 ENSDARG00000063899 1020.53 7651.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
20. tmsb4x ENSDARG00000077777 1020.53 7651.52 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. myhz1.3 ENSDARG00000067997 994.02 7452.76 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. apoa2 ENSDARG00000015866 959.62 7194.84 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
23. si:dkey-151g10.6 si:dkey-151g10.6 821.53 6159.50
24. mt-cyb ENSDARG00000063924 744.82 5584.36 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. si:ch211-226o13.2 703.44 5274.11 si:ch211-226o13.2
26. apobb apobb 696.93 5225.30
27. myl1 ENSDARG00000014196 654.16 4904.63 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
28. apoeb ENSDARG00000040295 637.42 4779.12 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
29. tnnt3a ENSDARG00000030270 632.77 4744.25 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
30. mt-nd1 ENSDARG00000063895 612.78 4594.38 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. tnnt3b ENSDARG00000068457 594.18 4454.92 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. actb2 ENSDARG00000037870 562.10 4214.40 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. pvalb1 ENSDARG00000037789 556.06 4169.11 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
34. acta1a ENSDARG00000036371 547.22 4102.83 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
35. eef1a1l1 ENSDARG00000020850 541.18 4057.55 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
36. mylpfb ENSDARG00000002589 508.17 3810.05 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
37. apoa1b ENSDARG00000101324 501.20 3757.79 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
38. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 490.04 3674.12 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
39. rpl23 ENSDARG00000053457 480.27 3600.87 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 476.55 3572.98 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 467.26 3503.33 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. aldoab ENSDARG00000034470 450.05 3374.29 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
43. mt-co1 ENSDARG00000063905 440.29 3301.12 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
44. hbae3 ENSDARG00000079305 420.76 3154.69 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
45. zgc:161979_1 zgc:161979_1 408.21 3060.59
46. nme2b.2 ENSDARG00000099420 373.81 2802.68 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
47. zgc:92533 zgc:92533 372.41 2792.18
48. gapdh ENSDARG00000043457 367.76 2757.32 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. ppiaa ENSDARG00000009212 360.79 2705.06 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
50. ttna ttna 335.22 2513.34
51. zgc:66286 zgc:66286 322.66 2419.17
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 313.83 2352.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. hbbe3 ENSDARG00000038147, ENSDARG00000109344 309.64 2321.56 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
54. btf3 ENSDARG00000035400, ENSDARG00000116462 302.21 2265.85 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. hmga1a ENSDARG00000028335 298.02 2234.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
56. myl10 ENSDARG00000062592 288.26 2161.26 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
57. zgc:161979 zgc:161979 286.40 2147.31
58. apoa1a ENSDARG00000012076, ENSDARG00000110395 282.21 2115.90 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
59. pkmb ENSDARG00000099860 282.21 2115.90 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
60. rps23 ENSDARG00000021838 280.82 2105.47 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
61. hspa8 ENSDARG00000068992, ENSDARG00000114726 276.63 2074.06 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
62. rpl8 ENSDARG00000014867 276.63 2074.06 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
63. rpl9 ENSDARG00000037350, ENSDARG00000112384 276.17 2070.61 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
64. zgc:112425 zgc:112425 271.99 2039.27
65. hbbe1.1 ENSDARG00000113599 267.80 2007.86 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
66. rplp1 ENSDARG00000021864 266.87 2000.88 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 262.69 1969.54 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. tpm3 ENSDARG00000005162 260.36 1952.07 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 252.92 1896.29 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. rps26l ENSDARG00000030408 247.81 1857.98 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
71. myhz1.2 ENSDARG00000067995 245.48 1840.51 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
72. col1a1a ENSDARG00000012405, ENSDARG00000116113 240.83 1805.65 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
73. ttnb ttnb 239.90 1798.67
74. zgc:153129 zgc:153129 238.05 1784.80
75. rpl18a ENSDARG00000025073 237.12 1777.83 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
76. ptmab ENSDARG00000101766 236.19 1770.86 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
77. rpl11 ENSDARG00000043509 232.93 1746.41 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
78. rpl19 ENSDARG00000013307 229.21 1718.52 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
79. si:dkeyp-113d7.4 si:dkeyp-113d7.4 226.42 1697.61
80. rpl26 ENSDARG00000102317 223.17 1673.24 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
81. rpl18 ENSDARG00000029533 218.52 1638.37 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
82. rpl27 ENSDARG00000015128 215.73 1617.46 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
83. cfl1l ENSDARG00000012972 214.33 1606.96 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
84. apoa4 apoa4 212.47 1593.01
85. rps20 ENSDARG00000036044 211.54 1586.04 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. tmem38a ENSDARG00000024047 211.54 1586.04 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
87. rps5 ENSDARG00000043453 211.08 1582.59 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
88. rps2 ENSDARG00000077291 209.68 1572.10 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. faua ENSDARG00000099022 207.82 1558.15 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. rplp2 ENSDARG00000101406 200.85 1505.89 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
91. rps9 ENSDARG00000011405, ENSDARG00000113248 200.39 1502.44 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
92. bhmt ENSDARG00000013430 199.46 1495.47 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
93. mt-nd3 ENSDARG00000063914 199.46 1495.47 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
94. col2a1a ENSDARG00000069093, ENSDARG00000111202 197.13 1478.00 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
95. rps4x ENSDARG00000014690 196.67 1474.55 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
96. fabp3 ENSDARG00000023290 193.88 1453.63 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
97. ATP5B 193.41 1450.11 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
98. rps15 ENSDARG00000070849, ENSDARG00000110979 192.95 1446.66 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
99. col1a1b ENSDARG00000035809 192.02 1439.69 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
100. pfn1 ENSDARG00000088091 191.09 1432.72 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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