Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s4.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10728.77 80421.74
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2863.30 21463.00 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2207.85 16549.81 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1483.40 11119.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. zgc:112425 zgc:112425 1379.91 10343.66
6. gch2 ENSDARG00000099101 1241.92 9309.30 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
7. hmgn2 ENSDARG00000099572 931.44 6981.98 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
8. mt-co3 ENSDARG00000063912 896.94 6723.37 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-nd2 ENSDARG00000063899 896.94 6723.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. ptmab ENSDARG00000101766 896.94 6723.37 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
11. si:dkey-151g10.6 si:dkey-151g10.6 724.45 5430.40
12. eef1a1l1 ENSDARG00000020850 689.95 5171.79 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. khdrbs1a ENSDARG00000052856 689.95 5171.79 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
14. si:dkeyp-86f7.3 si:dkeyp-86f7.3 655.46 4913.26
15. actb2 ENSDARG00000037870 620.96 4654.65 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. mt-nd1 ENSDARG00000063895 620.96 4654.65 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
17. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 586.46 4396.04 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
18. hnrnpab hnrnpab 586.46 4396.04
19. cirbp cirbp 551.96 4137.43
20. mt-nd4 ENSDARG00000063917 517.46 3878.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. mt-atp6 ENSDARG00000063911 482.97 3620.29 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 413.97 3103.08 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. marcksb ENSDARG00000008803 413.97 3103.08 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
24. mt-cyb ENSDARG00000063924 413.97 3103.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 413.97 3103.08 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. rpl9 ENSDARG00000037350, ENSDARG00000112384 413.97 3103.08 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
27. faua ENSDARG00000099022 379.47 2844.47 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
28. rpl18a ENSDARG00000025073 379.47 2844.47 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
29. si:ch1073-429i10.3 379.47 2844.47 si:ch1073-429i10.3, transcript variant X2
30. AL954137.2 ENSDARG00000114408 344.98 2585.93
31. cfl1 ENSDARG00000021124 344.98 2585.93 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
32. fabp3 ENSDARG00000023290 344.98 2585.93 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
33. h3f3d ENSDARG00000045248 344.98 2585.93 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
34. hmga1a ENSDARG00000028335 344.98 2585.93 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. icn ENSDARG00000009978 310.48 2327.33 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
36. mt-co1 ENSDARG00000063905 310.48 2327.33 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
37. ptmaa ENSDARG00000021113, ENSDARG00000110479 310.48 2327.33 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
38. rbb4 rbb4 310.48 2327.33
39. rpl19 ENSDARG00000013307 310.48 2327.33 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
40. rpl36a ENSDARG00000058105, ENSDARG00000112656 310.48 2327.33 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
41. rps15 ENSDARG00000070849, ENSDARG00000110979 310.48 2327.33 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 275.98 2068.72 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 275.98 2068.72 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
44. mt-nd3 ENSDARG00000063914 275.98 2068.72 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
45. nucks1a ENSDARG00000078473 275.98 2068.72 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
46. rpl11 ENSDARG00000043509 275.98 2068.72 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
47. rpl22 ENSDARG00000070437 275.98 2068.72 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
48. rpl38 ENSDARG00000006413 275.98 2068.72 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
49. rps23 ENSDARG00000021838 275.98 2068.72 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. rps24 ENSDARG00000039347 275.98 2068.72 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
51. rps27.1 ENSDARG00000023298 275.98 2068.72 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
52. sepw2a 275.98 2068.72 selenoprotein W, 2a
53. zgc:165571 zgc:165571 275.98 2068.72
54. atp5a1 241.48 1810.11 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
55. ccnd1 ENSDARG00000101637 241.48 1810.11 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
56. hsp90ab1 ENSDARG00000029150 241.48 1810.11 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
57. marcksl1b ENSDARG00000035715 241.48 1810.11 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
58. qdpra ENSDARG00000040190 241.48 1810.11 quinoid dihydropteridine reductase a [Source:ZFIN;Acc:ZDB-GENE-070705-197]
59. rpl27 ENSDARG00000015128 241.48 1810.11 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
60. rps6 ENSDARG00000019778 241.48 1810.11 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
61. stmn1a ENSDARG00000004169 241.48 1810.11 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
62. tenm3 ENSDARG00000005479 241.48 1810.11 teneurin transmembrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-990714-19]
63. tuba8l ENSDARG00000042708 241.48 1810.11 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
64. ywhabl ENSDARG00000040287 241.48 1810.11 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
65. btf3 ENSDARG00000035400, ENSDARG00000116462 206.99 1551.58 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
66. cldn5a ENSDARG00000043716 206.99 1551.58 claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
67. col1a1b ENSDARG00000035809 206.99 1551.58 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
68. cx43.4 ENSDARG00000007099 206.99 1551.58 connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
69. cyt1l ENSDARG00000036832 206.99 1551.58 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. eef2b ENSDARG00000100371, ENSDARG00000109247 206.99 1551.58 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
71. h3f3a 206.99 1551.58 H3 histone, family 3A, transcript variant X1
72. hnrnpa0a ENSDARG00000089302 206.99 1551.58 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
73. id1 ENSDARG00000040764 206.99 1551.58 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
74. ppiaa ENSDARG00000009212 206.99 1551.58 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
75. prmt1 ENSDARG00000010246 206.99 1551.58 protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
76. rpl26 ENSDARG00000102317 206.99 1551.58 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
77. rpl7 ENSDARG00000007320 206.99 1551.58 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
78. seta ENSDARG00000031495 206.99 1551.58 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
79. sirt2 ENSDARG00000011488 206.99 1551.58 sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-1028]
80. srsf6b ENSDARG00000016783 206.99 1551.58 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
81. wu:fq41a10 wu:fq41a10 206.99 1551.58
82. ATP5B 172.49 1292.97 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
83. ENDOD1_5 ENDOD1_5 172.49 1292.97
84. RPL29 ENSDARG00000077717 172.49 1292.97 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
85. TUBA1A ENSDARG00000001889 172.49 1292.97 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
86. ammecr1 ENSDARG00000012892 172.49 1292.97 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) [Source:ZFIN;Acc:ZDB-GENE-040426-1533]
87. ap1s1 ENSDARG00000056803 172.49 1292.97 adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
88. atp5ia 172.49 1292.97 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit Ea
89. banf1 ENSDARG00000037009 172.49 1292.97 barrier to autointegration factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6657]
90. bcam ENSDARG00000090190 172.49 1292.97 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
91. calm2a ENSDARG00000031427, ENSDARG00000111871 172.49 1292.97 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
92. celf2 ENSDARG00000002131, ENSDARG00000110267 172.49 1292.97 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
93. crkl ENSDARG00000028699 172.49 1292.97 v-crk avian sarcoma virus CT10 oncogene homolog-like [Source:ZFIN;Acc:ZDB-GENE-040426-2951]
94. dynll1 ENSDARG00000058454 172.49 1292.97 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
95. fkbp1aa ENSDARG00000022684 172.49 1292.97 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
96. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 172.49 1292.97 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
97. marcksl1a ENSDARG00000039034 172.49 1292.97 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
98. mcm4 ENSDARG00000040041 172.49 1292.97 minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]
99. mdka ENSDARG00000036036 172.49 1292.97 midkine a [Source:ZFIN;Acc:ZDB-GENE-990621-1]
100. pbx4 ENSDARG00000052150 172.49 1292.97 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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