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Experiment Zebrafish_40hpf_whole_embryo1, section s39.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23395.50 175377.82
2. tpma ENSDARG00000033683 3555.12 26649.96 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 2876.90 21565.88 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2629.99 19714.98 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 2629.10 19708.31 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2473.51 18541.98 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mylz3 ENSDARG00000017441 1736.33 13015.91 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1402.10 10510.45 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1318.32 9882.42 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. acta1b ENSDARG00000055618 1307.68 9802.66 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. atp2a1 ENSDARG00000020574 1298.81 9736.17 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. actc1b ENSDARG00000099197 1254.93 9407.23 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. mt-co2 ENSDARG00000063908 1236.75 9270.95 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. apoc1l apoc1l 910.94 6828.61
15. mt-atp6 ENSDARG00000063911 885.68 6639.25 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. tmsb4x ENSDARG00000077777 885.68 6639.25 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. mt-nd4 ENSDARG00000063917 852.43 6390.00 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. mt-co3 ENSDARG00000063912 840.46 6300.27 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. myhz1.3 ENSDARG00000067997 782.39 5864.97 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. tnnt3a ENSDARG00000030270 734.96 5509.42 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. apoa2 ENSDARG00000015866 728.75 5462.87 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. tnni2a.4 ENSDARG00000029069 722.99 5419.69 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. mt-nd2 ENSDARG00000063899 702.60 5266.84 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
24. si:ch211-226o13.2 679.55 5094.06 si:ch211-226o13.2
25. pvalb1 ENSDARG00000037789 675.12 5060.85 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
26. mylpfb ENSDARG00000002589 653.40 4898.03 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
27. apobb apobb 635.67 4765.12
28. tnnt3b ENSDARG00000068457 615.72 4615.57 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. actb2 ENSDARG00000037870 586.90 4399.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
30. acta1a ENSDARG00000036371 574.49 4306.50 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. mt-cyb ENSDARG00000063924 554.54 4156.95 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. eef1a1l1 ENSDARG00000020850 515.54 3864.60 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
33. si:dkey-151g10.6 si:dkey-151g10.6 507.56 3804.78
34. ttna ttna 481.40 3608.68
35. apoeb ENSDARG00000040295 478.74 3588.74 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
36. myl1 ENSDARG00000014196 469.43 3518.95 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. apoa1b ENSDARG00000101324 416.24 3120.23 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
38. mt-nd1 ENSDARG00000063895 414.47 3106.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
39. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 410.92 3080.35 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 406.05 3043.84 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 387.43 2904.26 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. ttnb ttnb 385.65 2890.92
43. aldoab ENSDARG00000034470 384.32 2880.95 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
44. hbae3 ENSDARG00000079305 373.24 2797.89 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
45. zgc:161979_1 zgc:161979_1 337.78 2532.07
46. rpl23 ENSDARG00000053457 334.68 2508.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
47. gapdh ENSDARG00000043457 319.61 2395.87 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
48. nme2b.2 ENSDARG00000099420 299.66 2246.32 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
49. ppiaa ENSDARG00000009212 290.35 2176.53 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
50. hbbe3 ENSDARG00000038147, ENSDARG00000109344 283.70 2126.68 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
51. zgc:66286 zgc:66286 273.50 2050.22
52. btf3 ENSDARG00000035400, ENSDARG00000116462 271.73 2036.95 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. myhz1.2 ENSDARG00000067995 269.96 2023.68 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
54. hmga1a ENSDARG00000028335 261.98 1963.86 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
55. rpl8 ENSDARG00000014867 259.32 1943.92 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. rplp1 ENSDARG00000021864 257.10 1927.28 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. rpl36a ENSDARG00000058105, ENSDARG00000112656 254.00 1904.04 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 252.67 1894.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. hbbe1.1 ENSDARG00000113599 244.69 1834.25 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
60. zgc:92533 zgc:92533 243.36 1824.28
61. apoa1a ENSDARG00000012076, ENSDARG00000110395 241.14 1807.64 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
62. rpl18a ENSDARG00000025073 240.70 1804.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
63. myl10 ENSDARG00000062592 236.27 1771.13 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
64. mt-co1 ENSDARG00000063905 233.61 1751.19 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
65. rps20 ENSDARG00000036044 232.28 1741.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
66. zgc:112425 zgc:112425 227.85 1708.01
67. rpl11 ENSDARG00000043509 222.08 1664.76 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
68. zgc:161979 zgc:161979 222.08 1664.76
69. pkmb ENSDARG00000099860 221.20 1658.16 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
70. rps27a ENSDARG00000032725, ENSDARG00000114059 220.75 1654.79 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
71. col1a1a ENSDARG00000012405, ENSDARG00000116113 216.76 1624.88 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
72. tpm3 ENSDARG00000005162 211.45 1585.08 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
73. ATP5B 211.00 1581.70 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
74. col1a1b ENSDARG00000035809 210.56 1578.40 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
75. ptmab ENSDARG00000101766 206.13 1545.20 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
76. rpl19 ENSDARG00000013307 199.48 1495.35 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. eif5a ENSDARG00000017235 198.59 1488.67 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
78. cyt1l ENSDARG00000036832 196.82 1475.41 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
79. fabp3 ENSDARG00000023290 195.04 1462.06 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. rpl26 ENSDARG00000102317 195.04 1462.06 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
81. rps26l ENSDARG00000030408 194.16 1455.47 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
82. rbp4 ENSDARG00000101199 192.83 1445.50 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
83. zgc:153129 zgc:153129 191.05 1432.15
84. rps23 ENSDARG00000021838 188.84 1415.59 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
85. rpl21 ENSDARG00000010516, ENSDARG00000110263 187.95 1408.91 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
86. rpl9 ENSDARG00000037350, ENSDARG00000112384 186.18 1395.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 186.18 1395.65 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. rpl18 ENSDARG00000029533 178.64 1339.12 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
89. tnni2b.1 ENSDARG00000035958 176.87 1325.86 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
90. CR354540.2 ENSDARG00000117517 174.65 1309.21
91. rps5 ENSDARG00000043453 174.21 1305.92 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
92. rpl27 ENSDARG00000015128 173.77 1302.62 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
93. rpsa ENSDARG00000019181 173.77 1302.62 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. si:dkeyp-113d7.4 si:dkeyp-113d7.4 169.78 1272.71
95. apoa4 apoa4 168.89 1266.04
96. rplp2 ENSDARG00000101406 167.12 1252.77 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
97. cfl1l ENSDARG00000012972 166.23 1246.10 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 166.23 1246.10 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. rps15a ENSDARG00000010160 165.79 1242.80 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. pfn1 ENSDARG00000088091 162.68 1219.49 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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