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Experiment Zebrafish_40hpf_whole_embryo1, section s38.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25122.91 188333.29
2. tpma ENSDARG00000033683 3608.95 27054.41 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3202.94 24010.76 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 3141.33 23548.91 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2470.15 18517.42 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2296.85 17218.28 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-co2 ENSDARG00000063908 1439.18 10788.78 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1356.11 10166.05 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
9. mylz3 ENSDARG00000017441 1328.60 9959.82 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1288.44 9658.76 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. mt-atp6 ENSDARG00000063911 1169.61 8767.95 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. acta1b ENSDARG00000055618 1113.49 8347.25 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
13. mt-co3 ENSDARG00000063912 1014.47 7604.95 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. atp2a1 ENSDARG00000020574 994.11 7452.32 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. actc1b ENSDARG00000099197 972.66 7291.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. apoc1l apoc1l 930.29 6973.90
17. mt-nd2 ENSDARG00000063899 918.74 6887.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
18. mt-nd4 ENSDARG00000063917 911.04 6829.59 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. tmsb4x ENSDARG00000077777 843.37 6322.30 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. si:dkey-151g10.6 si:dkey-151g10.6 826.87 6198.61
21. tnni2a.4 ENSDARG00000029069 812.56 6091.34 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. myhz1.3 ENSDARG00000067997 741.04 5555.19 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. tnnt3a ENSDARG00000030270 682.73 5118.07 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. apoa2 ENSDARG00000015866 622.21 4664.38 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
25. hbae3 ENSDARG00000079305 621.11 4656.14 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
26. mt-cyb ENSDARG00000063924 602.96 4520.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. pvalb1 ENSDARG00000037789 600.21 4499.46 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
28. acta1a ENSDARG00000036371 563.90 4227.26 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. apobb apobb 558.40 4186.03
30. tnnt3b ENSDARG00000068457 542.99 4070.51 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. si:ch211-226o13.2 511.08 3831.30 si:ch211-226o13.2
32. hbbe3 ENSDARG00000038147, ENSDARG00000109344 505.03 3785.95 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
33. apoa1b ENSDARG00000101324 490.18 3674.62 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
34. hbbe1.1 ENSDARG00000113599 489.63 3670.50 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
35. myl1 ENSDARG00000014196 481.38 3608.65 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. actb2 ENSDARG00000037870 477.53 3579.79 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
37. mylpfb ENSDARG00000002589 476.43 3571.55 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
38. apoeb ENSDARG00000040295 467.62 3505.50 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
39. eef1a1l1 ENSDARG00000020850 458.82 3439.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
40. mt-nd1 ENSDARG00000063895 448.37 3361.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 436.81 3274.54 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. rpl23 ENSDARG00000053457 435.16 3262.17 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
43. rpl10a ENSDARG00000042905, ENSDARG00000115649 426.36 3196.20 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
44. zgc:161979_1 zgc:161979_1 407.11 3051.89
45. aldoab ENSDARG00000034470 373.00 2796.19 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
46. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 368.05 2759.08 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
47. ttna ttna 358.69 2688.91
48. rpl18a ENSDARG00000025073 325.69 2441.53 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. nme2b.2 ENSDARG00000099420 324.59 2433.28 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
50. ppiaa ENSDARG00000009212 302.58 2268.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
51. gapdh ENSDARG00000043457 301.48 2260.04 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
52. myl10 ENSDARG00000062592 282.22 2115.66 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
53. zgc:92533 zgc:92533 275.07 2062.06
54. btf3 ENSDARG00000035400, ENSDARG00000116462 271.22 2033.19 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. ttnb ttnb 267.92 2008.46
56. rplp1 ENSDARG00000021864 262.42 1967.23 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. zgc:66286 zgc:66286 262.42 1967.23
58. myhz1.2 ENSDARG00000067995 261.87 1963.10 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 255.82 1917.75 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. pkmb ENSDARG00000099860 255.27 1913.63 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
61. rpl9 ENSDARG00000037350, ENSDARG00000112384 249.22 1868.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
62. zgc:161979 zgc:161979 246.46 1847.58
63. rpl8 ENSDARG00000014867 243.16 1822.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 241.51 1810.47 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. hbae1_1 240.41 1802.23 hemoglobin, alpha embryonic 1
66. rps27a ENSDARG00000032725, ENSDARG00000114059 239.31 1793.98 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
67. rpl11 ENSDARG00000043509 235.46 1765.12 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
68. rps23 ENSDARG00000021838 234.91 1761.00 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
69. rplp2 ENSDARG00000101406 229.96 1723.89 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
70. rps26l ENSDARG00000030408 225.01 1686.78 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
71. tpm3 ENSDARG00000005162 225.01 1686.78 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
72. fabp3 ENSDARG00000023290 224.46 1682.66 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. rps20 ENSDARG00000036044 223.91 1678.54 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. rpl36 ENSDARG00000100588 218.96 1641.43 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
75. hspa8 ENSDARG00000068992, ENSDARG00000114726 218.41 1637.31 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
76. rpl27 ENSDARG00000015128 209.05 1567.14 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
77. rps15 ENSDARG00000070849, ENSDARG00000110979 208.50 1563.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
78. rpl26 ENSDARG00000102317 207.95 1558.89 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
79. AL935210.1 ENSDARG00000088330 203.55 1525.91 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
80. rpl19 ENSDARG00000013307 203.55 1525.91 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
81. hmga1a ENSDARG00000028335 203.00 1521.78 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
82. zgc:112425 zgc:112425 200.25 1501.17
83. apoa1a ENSDARG00000012076, ENSDARG00000110395 198.05 1484.68 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
84. cfl1l ENSDARG00000012972 196.40 1472.31 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
85. cyt1l ENSDARG00000036832 190.90 1431.08 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
86. mt-nd3 ENSDARG00000063914 190.90 1431.08 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
87. tnni2b.1 ENSDARG00000035958 188.70 1414.59 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
88. rps2 ENSDARG00000077291 187.60 1406.34 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
89. tmem38a ENSDARG00000024047 187.60 1406.34 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
90. apoa4 apoa4 185.95 1393.97
91. pfn1 ENSDARG00000088091 185.40 1389.85 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
92. atp5g3b 183.75 1377.48 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. rpl18 ENSDARG00000029533 181.55 1360.99 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
94. rps6 ENSDARG00000019778 181.00 1356.86 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
95. mt-co1 ENSDARG00000063905 180.45 1352.74 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
96. si:dkeyp-113d7.4 si:dkeyp-113d7.4 179.90 1348.62
97. rpl7 ENSDARG00000007320 178.80 1340.37 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
98. fkbp1aa ENSDARG00000022684 177.70 1332.12 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. eif5a ENSDARG00000017235 177.15 1328.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
100. rps14 ENSDARG00000036629 177.15 1328.00 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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