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Experiment Zebrafish_40hpf_whole_embryo1, section s37.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 35212.53 263945.77
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3189.25 23905.95 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3139.71 23534.61 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2424.78 18175.64 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1768.61 13257.13 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1461.55 10955.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-co2 ENSDARG00000063908 1369.37 10264.51 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1310.04 9819.79 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
9. mylz3 ENSDARG00000017441 1247.24 9349.05 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. acta1b ENSDARG00000055618 1183.29 8869.69 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1130.29 8472.42 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. apoc1l apoc1l 944.79 7081.95
13. mt-atp6 ENSDARG00000063911 907.92 6805.58 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. mt-nd4 ENSDARG00000063917 901.01 6753.78 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. mt-nd2 ENSDARG00000063899 848.58 6360.78 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-co3 ENSDARG00000063912 786.94 5898.74 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. tnni2a.4 ENSDARG00000029069 772.54 5790.80 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
18. atp2a1 ENSDARG00000020574 733.94 5501.46 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
19. tmsb4x ENSDARG00000077777 725.88 5441.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. myhz1.3 ENSDARG00000067997 687.28 5151.71 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. mt-cyb ENSDARG00000063924 682.67 5117.15 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. actc1b ENSDARG00000099197 649.26 4866.72 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
23. tnnt3a ENSDARG00000030270 646.95 4849.40 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. apobb apobb 639.46 4793.26
25. apoa2 ENSDARG00000015866 618.15 4633.52 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. acta1a ENSDARG00000036371 602.02 4512.62 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. si:dkey-151g10.6 si:dkey-151g10.6 578.97 4339.84
28. pvalb1 ENSDARG00000037789 577.25 4326.95 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
29. apoa1b ENSDARG00000101324 519.06 3890.77 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
30. tnnt3b ENSDARG00000068457 477.00 3575.49 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. apoeb ENSDARG00000040295 463.75 3476.17 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
32. actb2 ENSDARG00000037870 449.93 3372.58 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. eef1a1l1 ENSDARG00000020850 446.47 3346.65 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
34. mt-nd1 ENSDARG00000063895 418.82 3139.39 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. rpl10a ENSDARG00000042905, ENSDARG00000115649 407.30 3053.04 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
36. rpl23 ENSDARG00000053457 406.15 3044.42 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. aldoab ENSDARG00000034470 404.42 3031.45 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
38. zgc:161979_1 zgc:161979_1 390.59 2927.78
39. si:ch211-226o13.2 373.88 2802.53 si:ch211-226o13.2
40. hbae3 ENSDARG00000079305 367.55 2755.08 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 366.40 2746.46 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 356.60 2673.00 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
43. mylpfb ENSDARG00000002589 354.30 2655.76 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
44. myl1 ENSDARG00000014196 336.44 2521.88 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
45. ppiaa ENSDARG00000009212 325.49 2439.81 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
46. ttna ttna 325.49 2439.81
47. mt-co1 ENSDARG00000063905 293.81 2202.34 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
48. ttnb ttnb 293.23 2197.99
49. btf3 ENSDARG00000035400, ENSDARG00000116462 290.35 2176.40 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. myl10 ENSDARG00000062592 290.35 2176.40 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
51. zgc:92533 zgc:92533 278.25 2085.70
52. rpl8 ENSDARG00000014867 268.46 2012.32 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. gapdh ENSDARG00000043457 265.00 1986.38 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
54. hspa8 ENSDARG00000068992, ENSDARG00000114726 265.00 1986.38 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
55. rpl18a ENSDARG00000025073 251.18 1882.79 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 250.02 1874.10 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. pkmb ENSDARG00000099860 234.47 1757.54 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
58. nme2b.2 ENSDARG00000099420 233.89 1753.19 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
59. zgc:66286 zgc:66286 232.17 1740.30
60. hmga1a ENSDARG00000028335 231.01 1731.60 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
61. zgc:161979 zgc:161979 228.71 1714.36
62. rps27a ENSDARG00000032725, ENSDARG00000114059 222.95 1671.19 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 219.49 1645.25 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. rplp2 ENSDARG00000101406 215.46 1615.04 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
65. rplp1 ENSDARG00000021864 214.31 1606.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 213.15 1597.73 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. hbbe1.1 ENSDARG00000113599 212.58 1593.46 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
68. rbp4 ENSDARG00000101199 211.43 1584.84 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
69. rpl11 ENSDARG00000043509 210.85 1580.49 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
70. rps20 ENSDARG00000036044 210.85 1580.49 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. rps23 ENSDARG00000021838 210.27 1576.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. apoa4 apoa4 207.39 1554.55
73. cyt1l ENSDARG00000036832 206.82 1550.28 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
74. hbbe3 ENSDARG00000038147, ENSDARG00000109344 206.24 1545.93 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
75. rps26l ENSDARG00000030408 206.24 1545.93 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
76. myhz1.2 ENSDARG00000067995 197.60 1481.17 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
77. zgc:153129 zgc:153129 194.72 1459.58
78. rpl26 ENSDARG00000102317 192.42 1442.34 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
79. rps5 ENSDARG00000043453 192.42 1442.34 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. rpl27 ENSDARG00000015128 191.84 1437.99 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
81. tpm3 ENSDARG00000005162 189.53 1420.68 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
82. zgc:112425 zgc:112425 188.96 1416.40
83. tnni2b.1 ENSDARG00000035958 187.23 1403.44 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
84. rpl18 ENSDARG00000029533 186.65 1399.09 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. rps14 ENSDARG00000036629 184.93 1386.20 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
86. rpl6 ENSDARG00000058451 182.62 1368.88 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
87. cfl1l ENSDARG00000012972 180.89 1355.91 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
88. rpl9 ENSDARG00000037350, ENSDARG00000112384 179.16 1342.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
89. rps15 ENSDARG00000070849, ENSDARG00000110979 177.44 1330.05 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. rpl19 ENSDARG00000013307 176.86 1325.71 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
91. pfn1 ENSDARG00000088091 170.52 1278.18 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
92. rps2 ENSDARG00000077291 170.52 1278.18 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
93. fkbp1aa ENSDARG00000022684 169.37 1269.56 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
94. rpl7 ENSDARG00000007320 165.34 1239.35 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
95. rps15a ENSDARG00000010160 165.34 1239.35 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
96. tmem38a ENSDARG00000024047 164.19 1230.73 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 163.61 1226.39 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. apoa1a ENSDARG00000012076, ENSDARG00000110395 163.03 1222.04 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
99. ptmab ENSDARG00000101766 163.03 1222.04 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
100. rps27.1 ENSDARG00000023298 163.03 1222.04 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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