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Experiment Zebrafish_40hpf_whole_embryo1, section s36.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 42545.41 318951.07
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3414.15 25594.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2366.52 17741.14 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-co2 ENSDARG00000063908 2055.52 15409.66 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. ckmb ENSDARG00000040565 1457.20 10924.22 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1395.31 10460.25 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-atp6 ENSDARG00000063911 1384.61 10380.04 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. tmsb4x ENSDARG00000077777 1370.09 10271.18 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. mt-nd4 ENSDARG00000063917 1089.65 8168.80 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. ckma ENSDARG00000035327, ENSDARG00000114671 1052.98 7893.90 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
11. mt-co3 ENSDARG00000063912 1027.00 7699.13 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mt-nd2 ENSDARG00000063899 952.11 7137.70 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 916.20 6868.50 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 858.12 6433.09 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mt-cyb ENSDARG00000063924 824.50 6181.05 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
16. apoc1l apoc1l 754.20 5654.03
17. tnni2a.4 ENSDARG00000029069 735.86 5516.54 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
18. tnnt3a ENSDARG00000030270 716.76 5373.35 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
19. mylz3 ENSDARG00000017441 715.99 5367.58 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
20. myhz1.3 ENSDARG00000067997 710.64 5327.47 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. atp2a1 ENSDARG00000020574 681.61 5109.84 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
22. actb2 ENSDARG00000037870 582.27 4365.12 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. si:dkey-151g10.6 si:dkey-151g10.6 518.08 3883.90
24. acta1b ENSDARG00000055618 513.50 3849.57 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
25. apoa2 ENSDARG00000015866 504.33 3780.82 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
26. ttna ttna 504.33 3780.82
27. ttnb ttnb 498.21 3734.94
28. apobb apobb 487.52 3654.80
29. mt-nd1 ENSDARG00000063895 459.24 3442.79 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. pvalb1 ENSDARG00000037789 414.92 3110.54 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
31. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 384.36 2881.44 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
32. apoa1b ENSDARG00000101324 374.43 2807.00 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
33. zgc:161979_1 zgc:161979_1 356.85 2675.20
34. eef1a1l1 ENSDARG00000020850 352.27 2640.87 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
35. rpl23 ENSDARG00000053457 349.97 2623.63 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. apoeb ENSDARG00000040295 346.15 2594.99 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
37. si:ch211-226o13.2 341.57 2560.66 si:ch211-226o13.2
38. zgc:92533 zgc:92533 341.57 2560.66
39. actc1b ENSDARG00000099197 311.00 2331.48 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
40. acta1a ENSDARG00000036371 303.36 2274.21 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 301.83 2262.74 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. tnnt3b ENSDARG00000068457 293.43 2199.76 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
43. myl1 ENSDARG00000014196 276.62 2073.74 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
44. mylpfb ENSDARG00000002589 269.74 2022.17 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
45. hbae3 ENSDARG00000079305 260.57 1953.42 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
46. ppiaa ENSDARG00000009212 255.98 1919.01 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
47. rps23 ENSDARG00000021838 247.58 1856.04 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. hbbe3 ENSDARG00000038147, ENSDARG00000109344 246.82 1850.34 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
49. rpl10a ENSDARG00000042905, ENSDARG00000115649 244.52 1833.10 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 244.52 1833.10 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. myl10 ENSDARG00000062592 243.76 1827.40 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
52. mt-nd3 ENSDARG00000063914 240.70 1804.46 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
53. gapdh ENSDARG00000043457 239.17 1792.99 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
54. rplp1 ENSDARG00000021864 237.65 1781.60 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 233.82 1752.88 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. cyt1l ENSDARG00000036832 229.24 1718.55 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
57. myhz1.2 ENSDARG00000067995 229.24 1718.55 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
58. btf3 ENSDARG00000035400, ENSDARG00000116462 227.71 1707.08 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
59. rps20 ENSDARG00000036044 227.71 1707.08 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
60. hspa8 ENSDARG00000068992, ENSDARG00000114726 225.42 1689.91 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
61. rpl11 ENSDARG00000043509 224.66 1684.21 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
62. cfl1l ENSDARG00000012972 214.72 1609.70 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
63. hmga1a ENSDARG00000028335 211.66 1586.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
64. rpl26 ENSDARG00000102317 208.61 1563.89 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. CR354540.2 ENSDARG00000117517 207.84 1558.12
66. rpl8 ENSDARG00000014867 207.84 1558.12 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 207.84 1558.12 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. si:dkeyp-113d7.4 si:dkeyp-113d7.4 207.84 1558.12
69. zgc:112425 zgc:112425 197.15 1477.98
70. aldoab ENSDARG00000034470 194.85 1460.74 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
71. rpl27 ENSDARG00000015128 192.56 1443.57 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 185.68 1391.99 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. col1a1a ENSDARG00000012405, ENSDARG00000116113 184.92 1386.29 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
74. tpm3 ENSDARG00000005162 182.63 1369.13 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
75. si:dkey-150i13.2 ENSDARG00000071052 181.10 1357.66 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
76. mt-co1 ENSDARG00000063905 180.34 1351.96 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
77. hbbe1.1 ENSDARG00000113599 179.57 1346.19 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
78. rps15a ENSDARG00000010160 179.57 1346.19 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
79. zgc:161979 zgc:161979 178.04 1334.72
80. AC024175.17 AC024175.17 175.75 1317.55
81. apoa4 apoa4 175.75 1317.55
82. zgc:153129 zgc:153129 174.99 1311.85
83. pkmb ENSDARG00000099860 172.69 1294.61 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
84. rps9 ENSDARG00000011405, ENSDARG00000113248 171.93 1288.91 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
85. rps26l ENSDARG00000030408 170.40 1277.44 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
86. ptmab ENSDARG00000101766 169.64 1271.74 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
87. col1a1b ENSDARG00000035809 168.11 1260.27 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
88. col11a1a ENSDARG00000026165, ENSDARG00000115341 162.00 1214.47 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
89. col2a1a ENSDARG00000069093, ENSDARG00000111202 162.00 1214.47 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
90. zgc:66286 zgc:66286 162.00 1214.47
91. rplp2 ENSDARG00000101406 157.41 1180.06 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
92. rpl36 ENSDARG00000100588 155.88 1168.59 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
93. rpl19 ENSDARG00000013307 149.01 1117.09 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
94. icn ENSDARG00000009978 148.24 1111.31 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
95. rpl18a ENSDARG00000025073 146.71 1099.84 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
96. rpl35 ENSDARG00000018334 146.71 1099.84 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
97. faua ENSDARG00000099022 143.66 1076.98 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
98. rps27.1 ENSDARG00000023298 143.66 1076.98 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
99. apoa1a ENSDARG00000012076, ENSDARG00000110395 142.13 1065.51 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
100. pnrc2 ENSDARG00000053291, ENSDARG00000112537 140.60 1054.04 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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