Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s35.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 26721.31 200324.40
2. tpma ENSDARG00000033683 3604.85 27024.85 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3472.02 26029.05 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2882.44 21609.09 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2239.86 16791.79 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1732.74 12990.01 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1442.20 10811.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
8. mt-co2 ENSDARG00000063908 1422.57 10664.73 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mylz3 ENSDARG00000017441 1416.68 10620.57 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1416.68 10620.57 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
11. acta1b ENSDARG00000055618 1351.90 10134.93 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-atp6 ENSDARG00000063911 1016.87 7623.27 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. apoc1l apoc1l 995.93 7466.29
14. tmsb4x ENSDARG00000077777 969.76 7270.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-co3 ENSDARG00000063912 952.09 7137.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. mt-nd4 ENSDARG00000063917 912.17 6838.36 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. actc1b ENSDARG00000099197 888.62 6661.81 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. atp2a1 ENSDARG00000020574 859.82 6445.90 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
19. apoa2 ENSDARG00000015866 831.03 6230.07 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
20. tnni2a.4 ENSDARG00000029069 827.76 6205.55 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. mt-nd2 ENSDARG00000063899 802.90 6019.18 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. apobb apobb 650.43 4876.15
23. si:dkey-151g10.6 si:dkey-151g10.6 638.00 4782.96
24. mt-cyb ENSDARG00000063924 619.68 4645.62 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. tnnt3a ENSDARG00000030270 619.68 4645.62 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. mylpfb ENSDARG00000002589 587.61 4405.20 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
27. myhz1.3 ENSDARG00000067997 584.34 4380.68 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
28. acta1a ENSDARG00000036371 541.15 4056.90 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. si:ch211-226o13.2 530.68 3978.40 si:ch211-226o13.2
30. apoeb ENSDARG00000040295 529.37 3968.58 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
31. tnnt3b ENSDARG00000068457 509.74 3821.42 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
32. apoa1b ENSDARG00000101324 497.97 3733.18 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
33. myl1 ENSDARG00000014196 483.57 3625.23 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. mt-nd1 ENSDARG00000063895 477.68 3581.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. actb2 ENSDARG00000037870 473.10 3546.74 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
36. pvalb1 ENSDARG00000037789 468.52 3512.40 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
37. rpl23 ENSDARG00000053457 453.47 3399.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. eef1a1l1 ENSDARG00000020850 447.58 3355.42 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 408.32 3061.09 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 406.36 3046.40 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
41. aldoab ENSDARG00000034470 382.80 2869.78 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 377.56 2830.49 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. zgc:92533 zgc:92533 374.95 2810.93
44. hbae3 ENSDARG00000079305 373.64 2801.11 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
45. ttna ttna 357.28 2678.46
46. gapdh ENSDARG00000043457 352.04 2639.17 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
47. zgc:161979_1 zgc:161979_1 334.38 2506.78
48. nme2b.2 ENSDARG00000099420 322.60 2418.47 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
49. ppiaa ENSDARG00000009212 319.33 2393.95 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 304.93 2286.00 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. myhz1.2 ENSDARG00000067995 300.35 2251.66 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
52. myl10 ENSDARG00000062592 296.42 2222.20 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
53. rplp1 ENSDARG00000021864 284.65 2133.97 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. mt-co1 ENSDARG00000063905 282.03 2114.32 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
55. hbbe3 ENSDARG00000038147, ENSDARG00000109344 276.79 2075.04 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
56. rpl18a ENSDARG00000025073 272.87 2045.65 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 270.25 2026.01 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. zgc:161979 zgc:161979 270.25 2026.01
59. rps27a ENSDARG00000032725, ENSDARG00000114059 266.32 1996.55 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
60. rpl8 ENSDARG00000014867 264.36 1981.85 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. rps20 ENSDARG00000036044 259.13 1942.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 257.82 1932.83 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. ttnb ttnb 253.24 1898.49
64. zgc:112425 zgc:112425 247.35 1854.33
65. cyt1l ENSDARG00000036832 244.08 1829.82 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
66. zgc:66286 zgc:66286 238.84 1790.54
67. pkmb ENSDARG00000099860 238.19 1785.66 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
68. rps15 ENSDARG00000070849, ENSDARG00000110979 234.91 1761.07 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
69. si:dkeyp-113d7.4 si:dkeyp-113d7.4 234.26 1756.20
70. rpl19 ENSDARG00000013307 232.95 1746.38 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. ptmab ENSDARG00000101766 231.64 1736.56 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
72. rpl21 ENSDARG00000010516, ENSDARG00000110263 231.64 1736.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
73. rpl11 ENSDARG00000043509 230.99 1731.69 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. pfn1 ENSDARG00000088091 229.68 1721.87 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
75. rps23 ENSDARG00000021838 229.68 1721.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
76. rpl9 ENSDARG00000037350, ENSDARG00000112384 229.02 1716.92 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
77. rps9 ENSDARG00000011405, ENSDARG00000113248 225.10 1687.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
78. hmga1a ENSDARG00000028335 217.90 1633.55 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
79. apoa1a ENSDARG00000012076, ENSDARG00000110395 212.01 1589.40 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
80. rpl18 ENSDARG00000029533 210.70 1579.58 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
81. tmem38a ENSDARG00000024047 208.74 1564.88 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
82. rps26l ENSDARG00000030408 206.12 1545.24 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. hbbe1.1 ENSDARG00000113599 198.27 1486.39 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
84. rpl26 ENSDARG00000102317 198.27 1486.39 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
85. rps5 ENSDARG00000043453 198.27 1486.39 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
86. cfl1l ENSDARG00000012972 195.00 1461.88 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
87. zgc:153129 zgc:153129 193.04 1447.18
88. tpm3 ENSDARG00000005162 190.42 1427.54 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
89. rbp4 ENSDARG00000101199 189.11 1417.72 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
90. rplp2 ENSDARG00000101406 187.80 1407.90 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
91. apoa4 apoa4 185.84 1393.21
92. rpl27 ENSDARG00000015128 185.84 1393.21 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
93. fabp3 ENSDARG00000023290 185.18 1388.26 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
94. rpl7 ENSDARG00000007320 185.18 1388.26 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
95. tnni2b.1 ENSDARG00000035958 181.91 1363.74 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
96. faua ENSDARG00000099022 177.99 1334.36 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. mt-nd3 ENSDARG00000063914 176.02 1319.59 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
98. rpl6 ENSDARG00000058451 172.10 1290.20 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
99. rps15a ENSDARG00000010160 172.10 1290.20 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. rps12 ENSDARG00000036875, ENSDARG00000115157 171.44 1285.25 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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