Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s34.

Sample reads: 133,405. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 33180.66 248720.57
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4536.76 34007.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2817.84 21122.39 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-co2 ENSDARG00000063908 2048.49 15355.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. ckmb ENSDARG00000040565 1986.70 14892.20 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1797.20 13471.72 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. mt-atp6 ENSDARG00000063911 1579.88 11842.70 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. ckma ENSDARG00000035327, ENSDARG00000114671 1524.27 11425.85 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
9. tmsb4x ENSDARG00000077777 1313.14 9843.23 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. mt-co3 ENSDARG00000063912 1219.42 9140.71 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1092.74 8191.12 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. mt-nd2 ENSDARG00000063899 1071.11 8028.99 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. atp2a1 ENSDARG00000020574 997.98 7480.81 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mt-nd4 ENSDARG00000063917 968.12 7256.98 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 928.98 6963.59 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. mt-cyb ENSDARG00000063924 835.26 6261.07 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
17. tnni2a.4 ENSDARG00000029069 817.75 6129.81 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
18. mylz3 ENSDARG00000017441 807.45 6052.60 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. tnnt3a ENSDARG00000030270 708.58 5311.48 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
20. apoc1l apoc1l 683.86 5126.18
21. si:dkey-151g10.6 si:dkey-151g10.6 677.68 5079.86
22. actb2 ENSDARG00000037870 664.29 4979.48 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. myhz1.3 ENSDARG00000067997 640.60 4801.91 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
24. acta1b ENSDARG00000055618 615.89 4616.68 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
25. pvalb1 ENSDARG00000037789 584.99 4385.06 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
26. ttna ttna 551.00 4130.27
27. apobb apobb 515.99 3867.84
28. mt-nd1 ENSDARG00000063895 505.69 3790.63 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. ttnb ttnb 491.27 3682.54
30. apoa2 ENSDARG00000015866 489.21 3667.09 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
31. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 474.79 3559.00 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
32. actc1b ENSDARG00000099197 445.95 3342.82 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
33. zgc:92533 zgc:92533 440.80 3304.21
34. si:ch211-226o13.2 417.11 3126.64 si:ch211-226o13.2
35. apoa1b ENSDARG00000101324 416.08 3118.91 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. eef1a1l1 ENSDARG00000020850 393.43 2949.13 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
37. actb1 ENSDARG00000037746, ENSDARG00000113649 369.74 2771.55 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. tnnt3b ENSDARG00000068457 357.38 2678.90 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
39. mylpfb ENSDARG00000002589 349.14 2617.14 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
40. apoeb ENSDARG00000040295 336.78 2524.49 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
41. myl1 ENSDARG00000014196 330.60 2478.16 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
42. acta1a ENSDARG00000036371 325.45 2439.56 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
43. ppiaa ENSDARG00000009212 315.15 2362.35 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. rpl23 ENSDARG00000053457 306.91 2300.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 295.58 2215.65 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. zgc:161979_1 zgc:161979_1 289.41 2169.40
47. cyt1l ENSDARG00000036832 276.02 2069.03 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
48. gapdh ENSDARG00000043457 269.84 2022.71 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. myhz1.2 ENSDARG00000067995 265.72 1991.82 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
50. rps23 ENSDARG00000021838 260.57 1953.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
51. hspa8 ENSDARG00000068992, ENSDARG00000114726 251.30 1883.73 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
52. aldoab ENSDARG00000034470 244.09 1829.69 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
53. hbbe3 ENSDARG00000038147, ENSDARG00000109344 242.03 1814.24 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
54. rpl8 ENSDARG00000014867 242.03 1814.24 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 239.97 1798.80 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. hbae3 ENSDARG00000079305 236.88 1775.64 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
57. col1a1a ENSDARG00000012405, ENSDARG00000116113 230.70 1729.32 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
58. rpl11 ENSDARG00000043509 230.70 1729.32 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. btf3 ENSDARG00000035400, ENSDARG00000116462 225.55 1690.71 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
60. si:dkeyp-113d7.4 si:dkeyp-113d7.4 225.55 1690.71
61. rps27a ENSDARG00000032725, ENSDARG00000114059 224.52 1682.99 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. tpm3 ENSDARG00000005162 224.52 1682.99 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. col1a1b ENSDARG00000035809 218.34 1636.67 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
64. zgc:112425 zgc:112425 217.31 1628.94
65. rps15 ENSDARG00000070849, ENSDARG00000110979 214.22 1605.78 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
66. hmga1a ENSDARG00000028335 212.16 1590.34 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
67. rpl18a ENSDARG00000025073 211.13 1582.62 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
68. rps20 ENSDARG00000036044 211.13 1582.62 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
69. mt-nd3 ENSDARG00000063914 209.07 1567.18 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
70. myl10 ENSDARG00000062592 205.98 1544.02 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
71. pkmb ENSDARG00000099860 201.86 1513.13 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
72. rplp1 ENSDARG00000021864 201.86 1513.13 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
73. zgc:66286 zgc:66286 201.86 1513.13
74. cfl1l ENSDARG00000012972 198.77 1489.97 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
75. rpl36 ENSDARG00000100588 195.68 1466.81 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
76. CR354540.2 ENSDARG00000117517 189.50 1420.48
77. fabp3 ENSDARG00000023290 189.50 1420.48 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
78. rpl21 ENSDARG00000010516, ENSDARG00000110263 187.44 1405.04 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
79. rplp2 ENSDARG00000101406 181.26 1358.72 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
80. mt-co1 ENSDARG00000063905 177.14 1327.83 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
81. col2a1a ENSDARG00000069093, ENSDARG00000111202 175.08 1312.39 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
82. rps9 ENSDARG00000011405, ENSDARG00000113248 174.06 1304.75 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. fkbp1aa ENSDARG00000022684 173.03 1297.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
84. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 172.00 1289.30 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
85. pfn1 ENSDARG00000088091 170.97 1281.58 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
86. icn ENSDARG00000009978 169.94 1273.86 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
87. si:dkey-150i13.2 ENSDARG00000071052 169.94 1273.86 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
88. rpl26 ENSDARG00000102317 167.88 1258.42 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
89. zgc:153129 zgc:153129 164.79 1235.26
90. eef2b ENSDARG00000100371, ENSDARG00000109247 161.70 1212.10 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
91. hbbe1.1 ENSDARG00000113599 159.64 1196.65 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
92. rpl9 ENSDARG00000037350, ENSDARG00000112384 156.55 1173.49 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
93. rps15a ENSDARG00000010160 156.55 1173.49 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
94. col11a1a ENSDARG00000026165, ENSDARG00000115341 153.46 1150.33 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
95. ptmab ENSDARG00000101766 151.40 1134.89 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
96. rpl27 ENSDARG00000015128 151.40 1134.89 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
97. zgc:161979 zgc:161979 150.37 1127.17
98. rps12 ENSDARG00000036875, ENSDARG00000115157 147.28 1104.00 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. pnrc2 ENSDARG00000053291, ENSDARG00000112537 146.25 1096.28 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
100. pvalb4 ENSDARG00000024433 146.25 1096.28 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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