Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s33.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 30593.55 229353.36
2. tpma ENSDARG00000033683 3542.33 26556.10 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3057.82 22923.83 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2802.56 21010.20 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 2374.29 17799.55 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1978.93 14835.62 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1756.57 13168.63 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. atp2a1 ENSDARG00000020574 1653.09 12392.87 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1417.46 10626.40 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. actc1b ENSDARG00000099197 1372.89 10292.27 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. acta1b ENSDARG00000055618 1243.93 9325.48 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. mt-co2 ENSDARG00000063908 1216.86 9122.54 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1118.69 8386.58 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. pvalb1 ENSDARG00000037789 1034.31 7754.00 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
15. mt-atp6 ENSDARG00000063911 986.02 7391.98 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. tmsb4x ENSDARG00000077777 971.16 7280.58 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. mt-nd4 ENSDARG00000063917 903.76 6775.30 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. mt-co3 ENSDARG00000063912 860.24 6449.04 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-nd2 ENSDARG00000063899 823.63 6174.58 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
20. tnnt3a ENSDARG00000030270 719.08 5390.79 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
21. tnni2a.4 ENSDARG00000029069 710.06 5323.17 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
22. mt-cyb ENSDARG00000063924 707.94 5307.28 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. apoc1l apoc1l 658.05 4933.26
24. actb2 ENSDARG00000037870 635.23 4762.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
25. ttna ttna 615.07 4611.05
26. si:dkey-151g10.6 si:dkey-151g10.6 602.86 4519.51
27. si:ch211-226o13.2 589.59 4420.03 si:ch211-226o13.2
28. acta1a ENSDARG00000036371 586.94 4400.16 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 579.51 4344.46 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
30. tnnt3b ENSDARG00000068457 530.69 3978.47 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. myhz1.3 ENSDARG00000067997 530.16 3974.50 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
32. eef1a1l1 ENSDARG00000020850 523.79 3926.74 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
33. ttnb ttnb 513.17 3847.13
34. mt-nd1 ENSDARG00000063895 468.07 3509.02 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
35. mylpfb ENSDARG00000002589 448.43 3361.78 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
36. myhz1.2 ENSDARG00000067995 442.59 3318.00 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
37. myl1 ENSDARG00000014196 422.96 3170.84 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
38. aldoab ENSDARG00000034470 392.71 2944.06 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 379.44 2844.58 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. apoa2 ENSDARG00000015866 364.05 2729.21 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
41. apoa1b ENSDARG00000101324 353.97 2653.64 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
42. zgc:92533 zgc:92533 353.97 2653.64
43. apobb apobb 335.92 2518.32
44. ppiaa ENSDARG00000009212 310.98 2331.35 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 301.43 2259.76 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. nme2b.2 ENSDARG00000099420 276.49 2072.79 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
47. col1a1b ENSDARG00000035809 267.47 2005.17 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
48. gapdh ENSDARG00000043457 249.95 1873.82 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 243.59 1826.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. rpl18a ENSDARG00000025073 241.99 1814.15 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. hbae3 ENSDARG00000079305 235.09 1762.42 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
52. rpl8 ENSDARG00000014867 231.91 1738.58 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
53. hmga1a ENSDARG00000028335 223.95 1678.91 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
54. zgc:66286 zgc:66286 220.23 1651.02
55. hspa8 ENSDARG00000068992, ENSDARG00000114726 219.70 1647.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
56. mt-co1 ENSDARG00000063905 219.70 1647.04 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
57. pkmb ENSDARG00000099860 218.11 1635.12 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
58. col1a1a ENSDARG00000012405, ENSDARG00000116113 217.05 1627.18 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
59. zgc:112425 zgc:112425 214.40 1607.31
60. rpl23 ENSDARG00000053457 211.74 1587.37 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 206.97 1551.61 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. si:dkeyp-113d7.4 si:dkeyp-113d7.4 205.38 1539.69
63. zgc:161979_1 zgc:161979_1 201.13 1507.83
64. rpl11 ENSDARG00000043509 200.60 1503.86 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
65. rps23 ENSDARG00000021838 199.54 1495.91 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
66. rpl26 ENSDARG00000102317 195.29 1464.05 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
67. myl10 ENSDARG00000062592 194.23 1456.10 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 189.99 1424.31 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. ATP5B 188.92 1416.29 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. apoeb ENSDARG00000040295 188.92 1416.29 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
71. ptmab ENSDARG00000101766 188.92 1416.29 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
72. tpm3 ENSDARG00000005162 184.15 1380.53 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
73. rpl36 ENSDARG00000100588 182.03 1364.64 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. si:dkey-150i13.2 ENSDARG00000071052 181.49 1360.59 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
75. cyt1l ENSDARG00000036832 179.90 1348.67 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. eef2b ENSDARG00000100371, ENSDARG00000109247 178.84 1340.73 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
77. rpl21 ENSDARG00000010516, ENSDARG00000110263 177.78 1332.78 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
78. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 176.72 1324.83 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
79. CR354540.2 ENSDARG00000117517 174.07 1304.97
80. rplp1 ENSDARG00000021864 169.29 1269.13 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
81. rps26l ENSDARG00000030408 164.51 1233.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
82. hbbe3 ENSDARG00000038147, ENSDARG00000109344 163.98 1229.32 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
83. rplp2 ENSDARG00000101406 163.98 1229.32 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
84. col2a1a ENSDARG00000069093, ENSDARG00000111202 158.68 1189.59 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
85. rps14 ENSDARG00000036629 158.68 1189.59 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
86. rpl9 ENSDARG00000037350, ENSDARG00000112384 157.61 1181.57 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
87. tnni2b.1 ENSDARG00000035958 152.84 1145.81 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
88. rpl19 ENSDARG00000013307 150.18 1125.87 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
89. eif5a ENSDARG00000017235 149.65 1121.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
90. rpsa ENSDARG00000019181 149.12 1117.92 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
91. AC024175.17 AC024175.17 147.00 1102.03
92. col11a1a ENSDARG00000026165, ENSDARG00000115341 147.00 1102.03 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
93. rps9 ENSDARG00000011405, ENSDARG00000113248 145.94 1094.08 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
94. rpl27 ENSDARG00000015128 142.22 1066.19 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
95. rpl18 ENSDARG00000029533 141.69 1062.22 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. hbbe1.1 ENSDARG00000113599 141.16 1058.25 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
97. rps20 ENSDARG00000036044 139.04 1042.35 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
98. fkbp1aa ENSDARG00000022684 138.51 1038.38 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. slc25a4 ENSDARG00000027355, ENSDARG00000112318 138.51 1038.38 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5275]
100. rps15a ENSDARG00000010160 136.39 1022.49 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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