Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s32.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12421.03 93102.84
2. tpma ENSDARG00000033683 4514.95 33842.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3744.49 28067.13 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3510.99 26316.91 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 3455.73 25902.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2439.29 18283.90 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylz3 ENSDARG00000017441 1941.98 14556.27 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. actc1b ENSDARG00000099197 1823.00 13664.45 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1658.57 12431.95 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
10. acta1b ENSDARG00000055618 1625.15 12181.44 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. atp2a1 ENSDARG00000020574 1538.70 11533.45 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. mt-co2 ENSDARG00000063908 1526.23 11439.98 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1406.36 10541.49 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
14. tnni2a.4 ENSDARG00000029069 1189.79 8918.17 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
15. tmsb4x ENSDARG00000077777 1064.12 7976.20 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. mt-atp6 ENSDARG00000063911 1011.54 7582.08 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. mt-co3 ENSDARG00000063912 937.57 7027.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. mt-nd4 ENSDARG00000063917 910.39 6823.90 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. si:ch211-226o13.2 820.82 6152.52 si:ch211-226o13.2
20. pvalb1 ENSDARG00000037789 765.56 5738.32 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. si:dkey-151g10.6 si:dkey-151g10.6 763.34 5721.68
22. mt-nd2 ENSDARG00000063899 738.83 5537.96 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. tnnt3b ENSDARG00000068457 734.37 5504.53 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
24. mt-cyb ENSDARG00000063924 704.07 5277.41 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. mylpfb ENSDARG00000002589 699.61 5243.98 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
26. myl1 ENSDARG00000014196 695.60 5213.93 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
27. actb2 ENSDARG00000037870 668.87 5013.57 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
28. tnnt3a ENSDARG00000030270 644.36 4829.85 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
29. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 640.35 4799.80 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
30. eef1a1l1 ENSDARG00000020850 622.08 4662.85 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. myhz1.2 ENSDARG00000067995 592.22 4439.03 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
32. apoc1l apoc1l 544.99 4085.02
33. apoa2 ENSDARG00000015866 535.18 4011.49 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
34. myhz1.3 ENSDARG00000067997 533.40 3998.14 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
35. acta1a ENSDARG00000036371 516.47 3871.24 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
36. apobb apobb 491.51 3684.15
37. mt-nd1 ENSDARG00000063895 452.30 3390.25 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
38. aldoab ENSDARG00000034470 438.93 3290.04 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
39. nme2b.2 ENSDARG00000099420 415.76 3116.36 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
40. zgc:92533 zgc:92533 404.62 3032.86
41. ttna ttna 404.17 3029.49
42. actb1 ENSDARG00000037746, ENSDARG00000113649 372.98 2795.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. hbae3 ENSDARG00000079305 370.30 2775.61 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 369.86 2772.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. gapdh ENSDARG00000043457 363.62 2725.54 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
46. mt-co1 ENSDARG00000063905 359.16 2692.11 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
47. ttnb ttnb 356.05 2668.80
48. rpl23 ENSDARG00000053457 350.25 2625.33 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. apoa1b ENSDARG00000101324 317.28 2378.20 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
50. col1a1b ENSDARG00000035809 310.15 2324.75 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
51. hbbe3 ENSDARG00000038147, ENSDARG00000109344 297.22 2227.84 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
52. si:dkeyp-113d7.4 si:dkeyp-113d7.4 289.65 2171.10
53. ppiaa ENSDARG00000009212 286.98 2151.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
54. zgc:112425 zgc:112425 286.98 2151.08
55. apoeb ENSDARG00000040295 283.86 2127.70 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
56. hmga1a ENSDARG00000028335 269.15 2017.44 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
57. pkmb ENSDARG00000099860 269.15 2017.44 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
58. col1a1a ENSDARG00000012405, ENSDARG00000116113 259.35 1943.98 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
59. btf3 ENSDARG00000035400, ENSDARG00000116462 251.77 1887.16 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
60. rpl8 ENSDARG00000014867 248.21 1860.48 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
61. rps23 ENSDARG00000021838 243.30 1823.67 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 241.97 1813.71 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. hbbe1.1 ENSDARG00000113599 240.63 1803.66 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
64. zgc:66286 zgc:66286 239.74 1796.99
65. hspa8 ENSDARG00000068992, ENSDARG00000114726 237.96 1783.65 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
66. zgc:161979_1 zgc:161979_1 228.60 1713.49
67. tpm3 ENSDARG00000005162 228.15 1710.12 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 227.71 1706.82 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. cyt1l ENSDARG00000036832 225.48 1690.10 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. rps20 ENSDARG00000036044 223.25 1673.39 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. ATP5B 221.47 1660.05 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. rpl26 ENSDARG00000102317 217.90 1633.29 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
73. rpl9 ENSDARG00000037350, ENSDARG00000112384 216.57 1623.32 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
74. rps27a ENSDARG00000032725, ENSDARG00000114059 213.89 1603.23 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
75. rps26l ENSDARG00000030408 210.78 1579.92 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
76. myl10 ENSDARG00000062592 206.32 1546.49 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
77. eif5a ENSDARG00000017235 205.87 1543.12 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
78. ptmab ENSDARG00000101766 201.42 1509.76 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
79. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 193.84 1452.94 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
80. rpl11 ENSDARG00000043509 191.17 1432.93 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
81. rps12 ENSDARG00000036875, ENSDARG00000115157 190.72 1429.56 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 190.72 1429.56 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. rps2 ENSDARG00000077291 185.82 1392.83 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. eef2b ENSDARG00000100371, ENSDARG00000109247 185.38 1389.53 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
85. rpl18a ENSDARG00000025073 184.48 1382.78 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
86. col2a1a ENSDARG00000069093, ENSDARG00000111202 184.04 1379.49 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
87. smyhc1 ENSDARG00000099959, ENSDARG00000115916 176.02 1319.37 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
88. icn ENSDARG00000009978 175.57 1316.00 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
89. gch2 ENSDARG00000099101 174.68 1309.33 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
90. pfn1 ENSDARG00000088091 173.34 1299.28 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
91. ldb3b ENSDARG00000099974 167.11 1252.59 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
92. rps15a ENSDARG00000010160 167.11 1252.59 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
93. rpl19 ENSDARG00000013307 165.32 1239.17 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
94. rps5 ENSDARG00000043453 164.88 1235.87 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
95. hbae1_1 162.65 1219.16 hemoglobin, alpha embryonic 1
96. rpl36 ENSDARG00000100588 162.20 1215.78 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. tmem38a ENSDARG00000024047 161.76 1212.49 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
98. fkbp1aa ENSDARG00000022684 157.30 1179.05 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. rpl18 ENSDARG00000029533 157.30 1179.05 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
100. tnni2b.1 ENSDARG00000035958 155.96 1169.01 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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