Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s3.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24207.09 181460.04
2. krt4 ENSDARG00000017624, ENSDARG00000115790 10473.02 78507.35 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2721.73 20402.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. icn ENSDARG00000009978 1555.27 11658.54 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
5. zgc:92533 zgc:92533 1442.39 10812.38
6. si:ch211-117m20.5 ENSDARG00000091996 1003.40 7521.64 si:ch211-117m20.5 [Source:ZFIN;Acc:ZDB-GENE-030131-12]
7. si:dkey-151g10.6 si:dkey-151g10.6 852.89 6393.39
8. zgc:165571 zgc:165571 815.26 6111.31
9. mt-co2 ENSDARG00000063908 802.72 6017.31 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. actb2 ENSDARG00000037870 790.18 5923.31 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 752.55 5641.23 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
12. cyt1l ENSDARG00000036832 714.92 5359.15 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
13. icn2 ENSDARG00000055514 702.38 5265.15 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
14. cfl1l ENSDARG00000012972 677.30 5077.14 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
15. zgc:153129 zgc:153129 652.21 4889.07
16. ptmab ENSDARG00000101766 614.58 4606.99 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 602.04 4512.98 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. mt-atp6 ENSDARG00000063911 576.96 4324.98 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-nd4 ENSDARG00000063917 501.70 3760.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. eef1a1l1 ENSDARG00000020850 489.16 3666.82 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. gch2 ENSDARG00000099101 489.16 3666.82 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 438.99 3290.74 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. ppiaa ENSDARG00000009212 401.36 3008.66 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
24. mt-co3 ENSDARG00000063912 388.82 2914.65 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. zgc:112425 zgc:112425 388.82 2914.65
26. btf3 ENSDARG00000035400, ENSDARG00000116462 376.28 2820.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. hspa8 ENSDARG00000068992, ENSDARG00000114726 363.73 2726.58 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
28. mt-nd2 ENSDARG00000063899 363.73 2726.58 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 351.19 2632.57 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. ywhabl ENSDARG00000040287 326.11 2444.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
31. im:7150988 ENSDARG00000109310 313.56 2350.49 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
32. rps15 ENSDARG00000070849, ENSDARG00000110979 313.56 2350.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
33. CU914813.1 CU914813.1 301.02 2256.49
34. faua ENSDARG00000099022 288.48 2162.49 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
35. hdlbp hdlbp 288.48 2162.49
36. hmga1a ENSDARG00000028335 288.48 2162.49 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. pfn1 ENSDARG00000088091 288.48 2162.49 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
38. ppib ENSDARG00000092798 288.48 2162.49 peptidylprolyl isomerase B (cyclophilin B) [Source:ZFIN;Acc:ZDB-GENE-040426-1955]
39. rps23 ENSDARG00000021838 288.48 2162.49 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
40. zgc:113413 zgc:113413 288.48 2162.49
41. rpl35a ENSDARG00000088030 263.39 1974.41 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
42. rps5 ENSDARG00000043453 263.39 1974.41 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
43. serp1 ENSDARG00000099439 263.39 1974.41 stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
44. calr ENSDARG00000076290 250.85 1880.41 calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
45. fkbp1aa ENSDARG00000022684 250.85 1880.41 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
46. mt-cyb ENSDARG00000063924 250.85 1880.41 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. rpl11 ENSDARG00000043509 250.85 1880.41 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
48. rpl36a ENSDARG00000058105, ENSDARG00000112656 250.85 1880.41 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
49. rpl7 ENSDARG00000007320 250.85 1880.41 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
50. rps20 ENSDARG00000036044 250.85 1880.41 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
51. rps26l ENSDARG00000030408 250.85 1880.41 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. s100a10b ENSDARG00000025254 250.85 1880.41 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
53. rpl9 ENSDARG00000037350, ENSDARG00000112384 238.31 1786.41 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
54. rplp2 ENSDARG00000101406 238.31 1786.41 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
55. gstp1 ENSDARG00000104068 225.77 1692.41 glutathione S-transferase pi 1 [Source:ZFIN;Acc:ZDB-GENE-020806-4]
56. rpl26 ENSDARG00000102317 225.77 1692.41 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
57. rpl8 ENSDARG00000014867 225.77 1692.41 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
58. capns1b ENSDARG00000013804 213.22 1598.33 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
59. rpl21 ENSDARG00000010516, ENSDARG00000110263 213.22 1598.33 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
60. sparc ENSDARG00000019353 213.22 1598.33 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
61. rpl36 ENSDARG00000100588 200.68 1504.33 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 200.68 1504.33 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
63. zgc:163030 ENSDARG00000069192 200.68 1504.33 zgc:163030 [Source:ZFIN;Acc:ZDB-GENE-060810-77]
64. anxa1c ENSDARG00000104359 188.14 1410.33 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
65. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 188.14 1410.33 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
66. hmgn2 ENSDARG00000099572 188.14 1410.33 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
67. hsp90ab1 ENSDARG00000029150 188.14 1410.33 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
68. id1 ENSDARG00000040764 188.14 1410.33 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
69. rpl18a ENSDARG00000025073 188.14 1410.33 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. rpl23 ENSDARG00000053457 188.14 1410.33 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
71. rpl39 ENSDARG00000036316, ENSDARG00000117167 188.14 1410.33 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
72. rplp1 ENSDARG00000021864 188.14 1410.33 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
73. rps27.1 ENSDARG00000023298 188.14 1410.33 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
74. rps27a ENSDARG00000032725, ENSDARG00000114059 188.14 1410.33 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
75. calrl calrl 175.60 1316.32
76. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 175.60 1316.32 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
77. rpl18 ENSDARG00000029533 175.60 1316.32 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. rpl35 ENSDARG00000018334 175.60 1316.32 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
79. rps7 ENSDARG00000042566 175.60 1316.32 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
80. si:dkey-253d23.10 175.60 1316.32 si:dkey-253d23.10, transcript variant X4
81. tnw 175.60 1316.32 tenascin W, transcript variant X2
82. anxa1a ENSDARG00000026726 163.05 1222.25 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
83. myh9a ENSDARG00000063295 163.05 1222.25 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
84. rpl5b ENSDARG00000015862, ENSDARG00000109661 163.05 1222.25 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
85. zgc:112964 ENSDARG00000101200 163.05 1222.25 zgc:112964 [Source:ZFIN;Acc:ZDB-GENE-050306-47]
86. FP067396.1 FP067396.1 150.51 1128.25
87. cope ENSDARG00000018562 150.51 1128.25 coatomer protein complex, subunit epsilon [Source:ZFIN;Acc:ZDB-GENE-041114-59]
88. gngt2a ENSDARG00000010680, ENSDARG00000110351 150.51 1128.25 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7595]
89. mt-co1 ENSDARG00000063905 150.51 1128.25 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
90. mt-nd3 ENSDARG00000063914 150.51 1128.25 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
91. prdx5 ENSDARG00000055064 150.51 1128.25 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
92. rpl24 ENSDARG00000099104 150.51 1128.25 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
93. rpl27 ENSDARG00000015128 150.51 1128.25 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
94. rpl28 ENSDARG00000005791 150.51 1128.25 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
95. rpl30 ENSDARG00000035871, ENSDARG00000109253 150.51 1128.25 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
96. rpl38 ENSDARG00000006413 150.51 1128.25 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
97. rpl5a ENSDARG00000020197 150.51 1128.25 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
98. rplp0 ENSDARG00000051783 150.51 1128.25 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
99. rps15a ENSDARG00000010160 150.51 1128.25 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 150.51 1128.25 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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