Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s28.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27147.50 203513.12
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3996.38 29959.14 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2352.22 17633.58 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1970.42 14771.39 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1805.95 13538.43 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1703.43 12769.88 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. apoc1l apoc1l 1493.57 11196.65
8. tmsb4x ENSDARG00000077777 1309.34 9815.56 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. apobb apobb 1172.11 8786.80
10. apoa2 ENSDARG00000015866 1168.37 8758.77 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
11. mylz3 ENSDARG00000017441 1166.23 8742.72 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. atp2a1 ENSDARG00000020574 1141.67 8558.61 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. actc1b ENSDARG00000099197 1132.59 8490.54 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1083.47 8122.31 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mt-co2 ENSDARG00000063908 1019.92 7645.90 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. acta1b ENSDARG00000055618 956.91 7173.54 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 934.48 7005.39 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. apoa1b ENSDARG00000101324 894.97 6709.20 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
19. apoeb ENSDARG00000040295 858.12 6432.96 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
20. actb2 ENSDARG00000037870 792.44 5940.58 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-co3 ENSDARG00000063912 778.02 5832.48 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. tnni2a.4 ENSDARG00000029069 720.89 5404.20 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. mt-atp6 ENSDARG00000063911 703.80 5276.09 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. mt-nd4 ENSDARG00000063917 654.67 4907.78 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
25. zgc:161979_1 zgc:161979_1 631.71 4735.66
26. si:dkey-151g10.6 si:dkey-151g10.6 621.03 4655.59
27. pvalb1 ENSDARG00000037789 616.76 4623.58 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
28. eef1a1l1 ENSDARG00000020850 607.15 4551.54 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. mt-nd2 ENSDARG00000063899 566.56 4247.26 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
30. tnnt3a ENSDARG00000030270 533.99 4003.09 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
31. mt-cyb ENSDARG00000063924 522.24 3915.01 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. apoa1a ENSDARG00000012076, ENSDARG00000110395 521.17 3906.99 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
33. myl1 ENSDARG00000014196 462.44 3466.71 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
34. apoa4 apoa4 417.05 3126.44
35. tnnt3b ENSDARG00000068457 412.24 3090.39 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
36. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 411.17 3082.36 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
37. si:ch211-226o13.2 399.42 2994.28 si:ch211-226o13.2
38. zgc:92533 zgc:92533 387.14 2902.22
39. hbae3 ENSDARG00000079305 371.12 2782.13 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 365.78 2742.10 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. ttna ttna 359.91 2698.09
42. myhz1.2 ENSDARG00000067995 359.38 2694.12 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
43. bhmt ENSDARG00000013430 351.37 2634.07 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
44. acta1a ENSDARG00000036371 339.08 2541.94 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
45. ttnb ttnb 334.28 2505.95
46. mt-nd1 ENSDARG00000063895 330.01 2473.94 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
47. mylpfb ENSDARG00000002589 325.73 2441.86 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
48. zgc:161979 zgc:161979 324.67 2433.91
49. rpl23 ENSDARG00000053457 312.38 2341.78 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
50. rpl10a ENSDARG00000042905, ENSDARG00000115649 311.85 2337.81 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
51. hbbe3 ENSDARG00000038147, ENSDARG00000109344 292.09 2189.67 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
52. mt-co1 ENSDARG00000063905 290.49 2177.68 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
53. aldoab ENSDARG00000034470 284.62 2133.67 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
54. gapdh ENSDARG00000043457 264.86 1985.54 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. nme2b.2 ENSDARG00000099420 247.77 1857.42 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
56. AC024175.17 AC024175.17 244.57 1833.44
57. zgc:153129 zgc:153129 240.30 1801.43
58. cyt1l ENSDARG00000036832 234.96 1761.39 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
59. zgc:112425 zgc:112425 232.29 1741.38
60. ppiaa ENSDARG00000009212 228.55 1713.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
61. col1a1b ENSDARG00000035809 228.01 1709.29 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 227.48 1705.32 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 227.48 1705.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. si:dkeyp-113d7.4 si:dkeyp-113d7.4 225.88 1693.33
65. rbp4 ENSDARG00000101199 225.34 1689.28 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
66. myhz1.3 ENSDARG00000067997 216.80 1625.26 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
67. rpl8 ENSDARG00000014867 216.27 1621.28 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
68. hbbe1.1 ENSDARG00000113599 215.73 1617.23 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
69. btf3 ENSDARG00000035400, ENSDARG00000116462 199.71 1497.14 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
70. rplp1 ENSDARG00000021864 199.18 1493.17 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
71. rps20 ENSDARG00000036044 196.51 1473.15 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. hspa8 ENSDARG00000068992, ENSDARG00000114726 195.44 1465.13 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
73. rpl18a ENSDARG00000025073 193.84 1453.14 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
74. rps23 ENSDARG00000021838 193.30 1449.09 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. ptmab ENSDARG00000101766 191.17 1433.12 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
76. hmga1a ENSDARG00000028335 190.63 1429.07 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
77. rpl36a ENSDARG00000058105, ENSDARG00000112656 189.57 1421.12 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
78. rpl9 ENSDARG00000037350, ENSDARG00000112384 189.03 1417.08 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
79. icn ENSDARG00000009978 188.50 1413.10 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
80. eef2b ENSDARG00000100371, ENSDARG00000109247 187.96 1409.06 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
81. rpl11 ENSDARG00000043509 187.43 1405.08 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
82. rps26l ENSDARG00000030408 178.89 1341.06 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
83. apoc2 ENSDARG00000092155 177.82 1333.04 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
84. rpl36 ENSDARG00000100588 177.28 1328.99 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
85. pla2g12b ENSDARG00000015662 176.75 1325.02 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
86. si:dkey-150i13.2 ENSDARG00000071052 175.68 1317.00 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
87. ATP5B 174.61 1308.98 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
88. rplp2 ENSDARG00000101406 171.94 1288.96 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
89. rps15 ENSDARG00000070849, ENSDARG00000110979 170.88 1281.01 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. col1a1a ENSDARG00000012405, ENSDARG00000116113 166.07 1244.96 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
91. pfn1 ENSDARG00000088091 164.47 1232.96 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
92. rpl26 ENSDARG00000102317 161.26 1208.90 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
93. pkmb ENSDARG00000099860 159.13 1192.93 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
94. rps2 ENSDARG00000077291 159.13 1192.93 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
95. zgc:66286 zgc:66286 159.13 1192.93
96. rpl27 ENSDARG00000015128 158.59 1188.88 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
97. myl10 ENSDARG00000062592 154.32 1156.87 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
98. rpl19 ENSDARG00000013307 153.79 1152.90 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
99. cfl1l ENSDARG00000012972 151.65 1136.85 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
100. APOB APOB 150.59 1128.91
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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