Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s27.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 34206.51 256396.47
2. apoc1l apoc1l 3373.70 25287.72
3. krt4 ENSDARG00000017624, ENSDARG00000115790 3240.82 24291.72 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. apobb apobb 2383.79 17867.81
5. apoa2 ENSDARG00000015866 2324.93 17426.62 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apoa1b ENSDARG00000101324 2184.03 16370.50 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
7. apoeb ENSDARG00000040295 1861.64 13954.01 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. tpma ENSDARG00000033683 1636.02 12262.86 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1442.94 10815.62 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. ckmb ENSDARG00000040565 1244.96 9331.66 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
11. ckma ENSDARG00000035327, ENSDARG00000114671 1239.61 9291.55 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. zgc:161979_1 zgc:161979_1 1132.59 8489.38
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 1120.55 8399.13 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. atp2a1 ENSDARG00000020574 1066.60 7994.75 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. mt-co2 ENSDARG00000063908 987.67 7403.13 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. tmsb4x ENSDARG00000077777 886.01 6641.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. zgc:161979 zgc:161979 768.74 5762.13
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 735.74 5514.77 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. mylz3 ENSDARG00000017441 735.29 5511.40 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
20. actc1b ENSDARG00000099197 732.17 5488.01 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
21. actb2 ENSDARG00000037870 727.27 5451.29 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. apoa4 apoa4 715.23 5361.04
23. mt-atp6 ENSDARG00000063911 577.00 4324.93 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. bhmt ENSDARG00000013430 575.66 4314.89 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
25. tnnc2 ENSDARG00000070835, ENSDARG00000111155 566.74 4248.03 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
26. acta1b ENSDARG00000055618 550.24 4124.35 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
27. mt-nd4 ENSDARG00000063917 549.80 4121.05 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
28. mt-co3 ENSDARG00000063912 497.18 3726.64 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
29. apoc2 ENSDARG00000092155 489.15 3666.45 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
30. mt-cyb ENSDARG00000063924 482.02 3613.00 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. pvalb1 ENSDARG00000037789 463.29 3472.61 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
32. eef1a1l1 ENSDARG00000020850 445.90 3342.26 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
33. mt-nd2 ENSDARG00000063899 444.56 3332.22 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
34. myhz1.2 ENSDARG00000067995 431.19 3232.00 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
35. si:dkey-151g10.6 si:dkey-151g10.6 405.33 3038.17
36. zgc:153129 zgc:153129 376.34 2820.87
37. tnnt3a ENSDARG00000030270 361.63 2710.61 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
38. actb1 ENSDARG00000037746, ENSDARG00000113649 357.61 2680.48 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. tfa ENSDARG00000016771 339.78 2546.84 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
40. tnni2a.4 ENSDARG00000029069 338.44 2536.79 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
41. si:ch211-226o13.2 334.87 2510.03 si:ch211-226o13.2
42. pla2g12b ENSDARG00000015662 324.62 2433.20 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
43. ttna ttna 319.71 2396.40
44. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 308.12 2309.53 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
45. fetub ENSDARG00000053973 307.23 2302.86 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
46. tnnt3b ENSDARG00000068457 303.66 2276.10 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
47. mt-nd1 ENSDARG00000063895 293.40 2199.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
48. rbp4 ENSDARG00000101199 292.96 2195.90 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
49. ttnb ttnb 267.54 2005.36
50. mylpfb ENSDARG00000002589 265.31 1988.64 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
51. APOB APOB 258.18 1935.20
52. myl1 ENSDARG00000014196 254.16 1905.07 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
53. sepp1a 230.53 1727.95 selenoprotein P, plasma, 1a
54. acta1a ENSDARG00000036371 229.19 1717.90 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
55. gapdh ENSDARG00000043457 226.07 1694.52 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
56. zgc:92533 zgc:92533 218.05 1634.40
57. col1a1b ENSDARG00000035809 204.22 1530.74 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
58. gamt ENSDARG00000070844, ENSDARG00000109945 202.44 1517.40 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
59. ppiaa ENSDARG00000009212 201.55 1510.73 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
60. rpl10a ENSDARG00000042905, ENSDARG00000115649 201.55 1510.73 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
61. rpl23 ENSDARG00000053457 199.32 1494.01 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
62. apoea ENSDARG00000102004 197.98 1483.97 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
63. aldob ENSDARG00000053684 195.31 1463.96 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
64. ctsla ENSDARG00000007836 194.41 1457.21 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
65. aldoab ENSDARG00000034470 190.40 1427.15 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
66. pvalb9 ENSDARG00000071601, ENSDARG00000113946 187.72 1407.06 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
67. hbae3 ENSDARG00000079305 187.28 1403.77 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
68. mt-co1 ENSDARG00000063905 187.28 1403.77 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
69. eef2b ENSDARG00000100371, ENSDARG00000109247 184.16 1380.38 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
70. slc43a2b ENSDARG00000061120, ENSDARG00000117188 183.71 1377.01 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
71. si:dkey-150i13.2 ENSDARG00000071052 182.82 1370.34 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
72. zgc:112425 zgc:112425 181.93 1363.66
73. cyt1l ENSDARG00000036832 178.81 1340.28 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
74. icn ENSDARG00000009978 178.36 1336.91 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
75. rpl21 ENSDARG00000010516, ENSDARG00000110263 178.36 1336.91 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
76. btf3 ENSDARG00000035400, ENSDARG00000116462 176.13 1320.19 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
77. hspa8 ENSDARG00000068992, ENSDARG00000114726 173.46 1300.18 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
78. AC024175.17 AC024175.17 172.12 1290.13
79. nme2b.2 ENSDARG00000099420 169.89 1273.42 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
80. rps27a ENSDARG00000032725, ENSDARG00000114059 168.11 1260.08 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
81. ahcy ENSDARG00000005191 163.65 1226.65 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
82. rpl8 ENSDARG00000014867 162.31 1216.60 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
83. hmga1a ENSDARG00000028335 160.52 1203.19 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
84. rplp1 ENSDARG00000021864 159.19 1193.22 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
85. hbbe3 ENSDARG00000038147, ENSDARG00000109344 156.07 1169.83 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
86. ptmab ENSDARG00000101766 155.62 1166.46 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
87. cfl1l ENSDARG00000012972 152.94 1146.37 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
88. rpl18a ENSDARG00000025073 152.05 1139.70 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
89. ATP5B 149.82 1122.98 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
90. rplp2 ENSDARG00000101406 148.04 1109.64 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
91. hbbe1.1 ENSDARG00000113599 144.92 1086.25 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
92. ldhba ENSDARG00000019644 143.13 1072.84 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
93. rps23 ENSDARG00000021838 142.69 1069.54 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
94. rpl36a ENSDARG00000058105, ENSDARG00000112656 141.80 1062.87 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
95. rpl11 ENSDARG00000043509 135.11 1012.72 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
96. si:dkeyp-113d7.4 si:dkeyp-113d7.4 135.11 1012.72
97. eif5a ENSDARG00000017235 133.77 1002.68 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
98. paics ENSDARG00000033539 133.32 999.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
99. rpl19 ENSDARG00000013307 129.31 969.25 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
100. pfn1 ENSDARG00000088091 127.53 955.91 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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