Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s26.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24994.54 187380.52
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3678.52 27577.34 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 3508.65 26303.85
4. apoa2 ENSDARG00000015866 2631.48 19727.83 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
5. apobb apobb 2461.61 18454.34
6. apoa1b ENSDARG00000101324 2053.23 15392.77 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
7. tpma ENSDARG00000033683 2003.26 15018.16 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. apoeb ENSDARG00000040295 1746.94 13096.56 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1558.38 11682.95 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. ckma ENSDARG00000035327, ENSDARG00000114671 1476.27 11067.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
11. ckmb ENSDARG00000040565 1449.77 10868.72 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
12. apoa1a ENSDARG00000012076, ENSDARG00000110395 1162.60 8715.85 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
13. actc1b ENSDARG00000099197 1117.85 8380.36 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. zgc:161979_1 zgc:161979_1 1023.14 7670.34
15. mt-co2 ENSDARG00000063908 1007.06 7549.79 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. tmsb4x ENSDARG00000077777 967.53 7253.44 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. atp2a1 ENSDARG00000020574 901.49 6758.34 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. zgc:161979 zgc:161979 868.04 6507.57
19. mylz3 ENSDARG00000017441 847.18 6351.19 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 840.23 6299.09 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. actb2 ENSDARG00000037870 788.10 5908.27 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 788.10 5908.27 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. apoa4 apoa4 781.15 5856.17
24. acta1b ENSDARG00000055618 739.87 5546.70 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
25. bhmt ENSDARG00000013430 664.71 4983.24 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
26. eef1a1l1 ENSDARG00000020850 648.20 4859.46 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. mt-co3 ENSDARG00000063912 590.42 4426.30 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
28. mt-atp6 ENSDARG00000063911 556.53 4172.23 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. mt-nd4 ENSDARG00000063917 535.25 4012.69 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
30. apoc2 ENSDARG00000092155 511.79 3836.82 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
31. tnni2a.4 ENSDARG00000029069 495.71 3716.27 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
32. mt-cyb ENSDARG00000063924 470.51 3527.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. mt-nd2 ENSDARG00000063899 451.83 3387.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
34. si:dkey-151g10.6 si:dkey-151g10.6 445.31 3338.43
35. zgc:153129 zgc:153129 398.83 2989.97
36. pla2g12b ENSDARG00000015662 373.20 2797.83 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 357.12 2677.28 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. actb1 ENSDARG00000037746, ENSDARG00000113649 338.44 2537.24 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. tnnt3b ENSDARG00000068457 334.96 2511.15 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
40. myhz1.2 ENSDARG00000067995 331.05 2481.83 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
41. si:ch211-226o13.2 322.36 2416.69 si:ch211-226o13.2
42. tnnt3a ENSDARG00000030270 316.28 2371.11 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
43. rbp4 ENSDARG00000101199 311.50 2335.27 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
44. myl1 ENSDARG00000014196 311.07 2332.05 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
45. mylpfb ENSDARG00000002589 306.72 2299.44 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
46. pvalb1 ENSDARG00000037789 300.64 2253.86 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
47. rpl23 ENSDARG00000053457 299.34 2244.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
48. gapdh ENSDARG00000043457 298.47 2237.59 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
49. zgc:92533 zgc:92533 298.04 2234.36
50. tfa ENSDARG00000016771 296.30 2221.32 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
51. ppiaa ENSDARG00000009212 292.82 2195.23 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
52. mt-nd1 ENSDARG00000063895 285.44 2139.90 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
53. APOB APOB 256.33 1921.67
54. rplp1 ENSDARG00000021864 250.68 1879.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 246.34 1846.78 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
56. sepp1a 238.51 1788.08 selenoprotein P, plasma, 1a
57. gamt ENSDARG00000070844, ENSDARG00000109945 237.21 1778.33 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
58. ctsla ENSDARG00000007836 236.78 1775.11 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
59. acta1a ENSDARG00000036371 235.91 1768.58 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 233.30 1749.02 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. zgc:112425 zgc:112425 232.87 1745.79
62. pvalb9 ENSDARG00000071601, ENSDARG00000113946 222.01 1664.38 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
63. slc43a2b ENSDARG00000061120, ENSDARG00000117188 215.92 1618.72 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
64. aldoab ENSDARG00000034470 214.19 1605.75 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
65. hbae3 ENSDARG00000079305 214.19 1605.75 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
66. icn ENSDARG00000009978 211.14 1582.89 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 208.10 1560.10 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. rplp2 ENSDARG00000101406 208.10 1560.10 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
69. eef2b ENSDARG00000100371, ENSDARG00000109247 204.63 1534.08 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
70. rps27a ENSDARG00000032725, ENSDARG00000114059 202.02 1514.52 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
71. hspa8 ENSDARG00000068992, ENSDARG00000114726 198.98 1491.72 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
72. rpl8 ENSDARG00000014867 198.11 1485.20 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
73. rpl19 ENSDARG00000013307 195.50 1465.64 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
74. rps23 ENSDARG00000021838 194.20 1455.89 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. rpl11 ENSDARG00000043509 193.33 1449.37 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. ptmab ENSDARG00000101766 188.12 1410.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
77. fetub ENSDARG00000053973 187.25 1403.79 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
78. rpl18a ENSDARG00000025073 187.25 1403.79 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
79. rps20 ENSDARG00000036044 184.64 1384.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
80. rps26l ENSDARG00000030408 183.77 1377.70 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
81. nme2b.2 ENSDARG00000099420 182.90 1371.18 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
82. rps15 ENSDARG00000070849, ENSDARG00000110979 182.47 1367.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
83. si:dkeyp-113d7.4 si:dkeyp-113d7.4 182.47 1367.95
84. hbbe1.1 ENSDARG00000113599 181.60 1361.43 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
85. pfn1 ENSDARG00000088091 180.30 1351.68 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
86. rpl35 ENSDARG00000018334 179.43 1345.16 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
87. aldob ENSDARG00000053684 178.99 1341.86 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
88. cyt1l ENSDARG00000036832 178.99 1341.86 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
89. hmga1a ENSDARG00000028335 178.99 1341.86 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
90. ahcy ENSDARG00000005191 177.26 1328.89 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
91. btf3 ENSDARG00000035400, ENSDARG00000116462 177.26 1328.89 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
92. ttna ttna 177.26 1328.89
93. rps9 ENSDARG00000011405, ENSDARG00000113248 176.39 1322.37 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
94. apoea ENSDARG00000102004 174.22 1306.10 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
95. eif5a ENSDARG00000017235 173.35 1299.58 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
96. hbbe3 ENSDARG00000038147, ENSDARG00000109344 172.48 1293.06 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
97. cfl1l ENSDARG00000012972 170.74 1280.01 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
98. mt-co1 ENSDARG00000063905 170.74 1280.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
99. rpl18 ENSDARG00000029533 168.13 1260.45 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
100. rpl9 ENSDARG00000037350, ENSDARG00000112384 165.09 1237.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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