Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s25.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25590.87 191847.82
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4073.24 30535.98 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2357.33 17672.26
4. apobb apobb 2060.45 15446.64
5. apoa2 ENSDARG00000015866 2052.28 15385.39 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apoa1b ENSDARG00000101324 1890.90 14175.56 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
7. tpma ENSDARG00000033683 1880.01 14093.93 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. ckmb ENSDARG00000040565 1579.73 11842.81 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. tmsb4x ENSDARG00000077777 1551.13 11628.40 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1491.21 11179.20 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
11. ckma ENSDARG00000035327, ENSDARG00000114671 1401.33 10505.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mt-co2 ENSDARG00000063908 1174.58 8805.51 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. apoeb ENSDARG00000040295 1162.32 8713.60 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
14. mylz3 ENSDARG00000017441 1061.55 7958.15 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
15. atp2a1 ENSDARG00000020574 1039.76 7794.80 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. actc1b ENSDARG00000099197 1033.63 7748.84 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
17. zgc:161979_1 zgc:161979_1 986.65 7396.65
18. actb2 ENSDARG00000037870 977.11 7325.13 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. apoa1a ENSDARG00000012076, ENSDARG00000110395 904.94 6784.09 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
20. bhmt ENSDARG00000013430 860.00 6447.19 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 850.46 6375.67 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. apoa4 apoa4 811.65 6084.72
23. tnnc2 ENSDARG00000070835, ENSDARG00000111155 714.28 5354.76 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
24. mt-co3 ENSDARG00000063912 711.56 5334.37 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. mt-nd4 ENSDARG00000063917 648.91 4864.70 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. acta1b ENSDARG00000055618 638.70 4788.16 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
27. mt-atp6 ENSDARG00000063911 591.72 4435.96 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
28. pvalb1 ENSDARG00000037789 567.88 4257.24 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
29. zgc:161979 zgc:161979 563.80 4226.66
30. eef1a1l1 ENSDARG00000020850 536.56 4022.44 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. mt-cyb ENSDARG00000063924 511.37 3833.60 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. mt-nd2 ENSDARG00000063899 488.22 3660.05 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
33. si:dkey-151g10.6 si:dkey-151g10.6 482.09 3614.10
34. actb1 ENSDARG00000037746, ENSDARG00000113649 401.06 3006.64 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. tnni2a.4 ENSDARG00000029069 392.89 2945.39 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
36. myhz1.2 ENSDARG00000067995 390.85 2930.10 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
37. si:ch211-226o13.2 378.59 2838.19 si:ch211-226o13.2
38. zgc:153129 zgc:153129 373.82 2802.43
39. zgc:92533 zgc:92533 369.06 2766.74
40. tnnt3b ENSDARG00000068457 345.91 2593.19 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
41. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 322.07 2414.47 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
42. tnnt3a ENSDARG00000030270 320.03 2399.18 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
43. myl1 ENSDARG00000014196 318.67 2388.98 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
44. cyt1l ENSDARG00000036832 307.77 2307.27 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
45. apoc2 ENSDARG00000092155 301.65 2261.39 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
46. gapdh ENSDARG00000043457 299.60 2246.02 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
47. slc43a2b ENSDARG00000061120, ENSDARG00000117188 291.43 2184.77 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
48. ctsla ENSDARG00000007836 286.67 2149.09 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
49. mylpfb ENSDARG00000002589 278.49 2087.76 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
50. ttna ttna 278.49 2087.76
51. mt-co1 ENSDARG00000063905 275.77 2067.37 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
52. mt-nd1 ENSDARG00000063895 264.88 1985.73 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
53. ppiaa ENSDARG00000009212 263.51 1975.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
54. gamt ENSDARG00000070844, ENSDARG00000109945 249.90 1873.43 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
55. aldoab ENSDARG00000034470 242.41 1817.28 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 242.41 1817.28 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. rpl10a ENSDARG00000042905, ENSDARG00000115649 241.04 1807.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
58. pla2g12b ENSDARG00000015662 235.60 1766.23 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
59. zgc:112425 zgc:112425 233.55 1750.86
60. icn ENSDARG00000009978 230.83 1730.47 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
61. eef2b ENSDARG00000100371, ENSDARG00000109247 217.21 1628.36 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
62. acta1a ENSDARG00000036371 216.53 1623.27 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
63. rpl23 ENSDARG00000053457 215.85 1618.17 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
64. tfa ENSDARG00000016771 213.81 1602.88 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
65. ttnb ttnb 213.81 1602.88
66. hmga1a ENSDARG00000028335 210.40 1577.31 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 210.40 1577.31 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. hspa8 ENSDARG00000068992, ENSDARG00000114726 204.96 1536.53 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
69. nme2b.2 ENSDARG00000099420 202.91 1521.16 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
70. APOB APOB 198.15 1485.48
71. col1a1b ENSDARG00000035809 192.02 1439.52 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
72. ptmab ENSDARG00000101766 189.29 1419.06 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. rpl36a ENSDARG00000058105, ENSDARG00000112656 187.93 1408.86 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
74. si:dkey-150i13.2 ENSDARG00000071052 187.25 1403.76 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
75. si:dkeyp-113d7.4 si:dkeyp-113d7.4 185.21 1388.47
76. rpl8 ENSDARG00000014867 182.49 1368.08 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
77. btf3 ENSDARG00000035400, ENSDARG00000116462 181.80 1362.91 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
78. pvalb9 ENSDARG00000071601, ENSDARG00000113946 181.80 1362.91 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
79. rps23 ENSDARG00000021838 180.44 1352.71 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
80. aldob ENSDARG00000053684 172.95 1296.56 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
81. hbbe3 ENSDARG00000038147, ENSDARG00000109344 169.55 1271.07 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
82. eif5a ENSDARG00000017235 168.19 1260.87 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
83. rps20 ENSDARG00000036044 168.19 1260.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
84. pfn1 ENSDARG00000088091 165.46 1240.41 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
85. rpl36 ENSDARG00000100588 164.10 1230.21 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. col1a1a ENSDARG00000012405, ENSDARG00000116113 163.42 1225.12 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
87. icn2 ENSDARG00000055514 157.29 1179.16 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
88. rbp4 ENSDARG00000101199 157.29 1179.16 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
89. sepp1a 153.89 1153.67 selenoprotein P, plasma, 1a
90. col11a1a ENSDARG00000026165, ENSDARG00000115341 152.53 1143.48 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
91. rpl11 ENSDARG00000043509 152.53 1143.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
92. fetub ENSDARG00000053973 150.48 1128.11 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
93. rplp2 ENSDARG00000101406 150.48 1128.11 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
94. rpl9 ENSDARG00000037350, ENSDARG00000112384 149.12 1117.91 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
95. rpl26 ENSDARG00000102317 147.76 1107.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
96. pnrc2 ENSDARG00000053291, ENSDARG00000112537 145.72 1092.42 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
97. ahcy ENSDARG00000005191 144.35 1082.15 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
98. rplp1 ENSDARG00000021864 143.67 1077.06 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
99. rps26l ENSDARG00000030408 142.31 1066.86 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 140.27 1051.57 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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