Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s24.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13065.72 97943.72
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4411.72 33071.29 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2394.93 17952.96
4. apobb apobb 2381.50 17852.29
5. tpma ENSDARG00000033683 2252.35 16884.15 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. apoa2 ENSDARG00000015866 2183.13 16365.26 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
7. ckmb ENSDARG00000040565 1736.79 13019.39 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. apoa1b ENSDARG00000101324 1678.93 12585.66 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1638.64 12283.63 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1576.65 11818.94 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
11. tmsb4x ENSDARG00000077777 1544.62 11578.84 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. actc1b ENSDARG00000099197 1264.62 9479.89 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. mylz3 ENSDARG00000017441 1155.11 8658.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. mt-co2 ENSDARG00000063908 1141.67 8558.23 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
15. atp2a1 ENSDARG00000020574 1038.36 7783.79 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. apoeb ENSDARG00000040295 1016.66 7621.12 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
17. actb2 ENSDARG00000037870 1005.29 7535.89 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 943.30 7071.20 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 875.11 6560.03 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. apoa1a ENSDARG00000012076, ENSDARG00000110395 846.18 6343.17 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
21. mt-co3 ENSDARG00000063912 785.22 5886.19 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. zgc:161979_1 zgc:161979_1 783.16 5870.75
23. acta1b ENSDARG00000055618 781.09 5855.24 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
24. eef1a1l1 ENSDARG00000020850 682.94 5119.48 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. tnni2a.4 ENSDARG00000029069 666.41 4995.57 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
26. bhmt ENSDARG00000013430 646.78 4848.42 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
27. zgc:161979 zgc:161979 595.12 4461.16
28. si:dkey-151g10.6 si:dkey-151g10.6 567.22 4252.02
29. apoa4 apoa4 548.62 4112.59
30. mt-atp6 ENSDARG00000063911 547.59 4104.86 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
31. pvalb1 ENSDARG00000037789 525.89 3942.20 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
32. mt-nd4 ENSDARG00000063917 504.20 3779.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
33. hbae3 ENSDARG00000079305 475.27 3562.74 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
34. hbbe1.1 ENSDARG00000113599 467.00 3500.74 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
35. si:ch211-226o13.2 464.94 3485.30 si:ch211-226o13.2
36. mt-cyb ENSDARG00000063924 445.30 3338.07 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. myl1 ENSDARG00000014196 427.74 3206.44 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
38. myhz1.2 ENSDARG00000067995 424.64 3183.20 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
39. hbbe3 ENSDARG00000038147, ENSDARG00000109344 420.51 3152.24 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
40. mt-nd2 ENSDARG00000063899 420.51 3152.24 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
41. actb1 ENSDARG00000037746, ENSDARG00000113649 417.41 3129.00 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
42. zgc:92533 zgc:92533 409.14 3067.01
43. ctsla ENSDARG00000007836 397.78 2981.85 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
44. tnnt3a ENSDARG00000030270 394.68 2958.61 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
45. tnnt3b ENSDARG00000068457 357.48 2679.75 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
46. zgc:153129 zgc:153129 356.45 2672.03
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 353.35 2648.80 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. apoc2 ENSDARG00000092155 352.32 2641.07 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
49. rpl23 ENSDARG00000053457 330.62 2478.41 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
50. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 325.45 2439.65 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
51. zgc:112425 zgc:112425 322.36 2416.49
52. cyt1l ENSDARG00000036832 310.99 2331.25 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
53. mt-co1 ENSDARG00000063905 310.99 2331.25 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
54. ppiaa ENSDARG00000009212 307.89 2308.02 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
55. hspa8 ENSDARG00000068992, ENSDARG00000114726 294.46 2207.34 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
56. slc43a2b ENSDARG00000061120, ENSDARG00000117188 290.33 2176.38 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
57. gapdh ENSDARG00000043457 285.16 2137.63 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
58. mylpfb ENSDARG00000002589 283.09 2122.11 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
59. aldoab ENSDARG00000034470 272.76 2044.67 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
60. mt-nd1 ENSDARG00000063895 271.73 2036.95 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
61. rps27a ENSDARG00000032725, ENSDARG00000114059 269.66 2021.44 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
62. icn ENSDARG00000009978 264.50 1982.75 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
63. rpl11 ENSDARG00000043509 262.43 1967.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. rps23 ENSDARG00000021838 255.20 1913.04 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
65. pla2g12b ENSDARG00000015662 253.13 1897.52 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
66. si:dkeyp-113d7.4 si:dkeyp-113d7.4 251.07 1882.08
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 247.97 1858.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. ptmab ENSDARG00000101766 240.73 1804.57 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
69. rpl19 ENSDARG00000013307 240.73 1804.57 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 238.67 1789.13 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. hmga1a ENSDARG00000028335 235.57 1765.89 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
72. rps20 ENSDARG00000036044 235.57 1765.89 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. tfa ENSDARG00000016771 234.53 1758.09 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
74. btf3 ENSDARG00000035400, ENSDARG00000116462 232.47 1742.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
75. eef2b ENSDARG00000100371, ENSDARG00000109247 230.40 1727.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
76. pfn1 ENSDARG00000088091 229.37 1719.41 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
77. pvalb9 ENSDARG00000071601, ENSDARG00000113946 225.24 1688.45 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
78. rpl8 ENSDARG00000014867 225.24 1688.45 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
79. rpl9 ENSDARG00000037350, ENSDARG00000112384 224.20 1680.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
80. rpl18a ENSDARG00000025073 215.94 1618.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
81. APOB APOB 212.84 1595.50
82. acta1a ENSDARG00000036371 209.74 1572.26 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
83. eif5a ENSDARG00000017235 203.54 1525.78 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
84. nme2b.2 ENSDARG00000099420 203.54 1525.78 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
85. rplp1 ENSDARG00000021864 203.54 1525.78 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
86. rps15a ENSDARG00000010160 203.54 1525.78 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. col1a1b ENSDARG00000035809 194.24 1456.07 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
88. rpl26 ENSDARG00000102317 194.24 1456.07 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
89. cfl1l ENSDARG00000012972 192.17 1440.55 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
90. gamt ENSDARG00000070844, ENSDARG00000109945 185.97 1394.08 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 185.97 1394.08 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. rps2 ENSDARG00000077291 185.97 1394.08 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
93. col1a1a ENSDARG00000012405, ENSDARG00000116113 183.91 1378.63 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
94. ttna ttna 183.91 1378.63
95. rps26l ENSDARG00000030408 180.81 1355.39 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
96. rps27.1 ENSDARG00000023298 178.74 1339.88 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
97. ATP5B 177.71 1332.16 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
98. rpl36 ENSDARG00000100588 177.71 1332.16 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
99. rbp4 ENSDARG00000101199 176.68 1324.44 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
100. sepp1a 173.58 1301.20 selenoprotein P, plasma, 1a
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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