Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s23.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 35866.49 268852.92
2. apoc1l apoc1l 4513.13 33830.13
3. apoa2 ENSDARG00000015866 3134.00 23492.26 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
4. apobb apobb 2722.93 20410.91
5. apoa1b ENSDARG00000101324 2150.63 16120.99 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
6. krt4 ENSDARG00000017624, ENSDARG00000115790 1381.12 10352.79 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
7. apoeb ENSDARG00000040295 1341.15 10053.17 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. apoa1a ENSDARG00000012076, ENSDARG00000110395 1331.15 9978.22 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
9. zgc:161979_1 zgc:161979_1 1255.87 9413.92
10. hbae3 ENSDARG00000079305 1002.69 7516.10 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
11. apoa4 apoa4 963.39 7221.51
12. tmsb4x ENSDARG00000077777 928.74 6961.78 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. pvalb2 ENSDARG00000002768, ENSDARG00000114085 876.11 6567.26 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
14. hbbe3 ENSDARG00000038147, ENSDARG00000109344 858.79 6437.43 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
15. zgc:161979 zgc:161979 854.79 6407.45
16. mt-co2 ENSDARG00000063908 763.51 5723.22 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. hbbe1.1 ENSDARG00000113599 719.54 5393.63 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
18. si:dkey-151g10.6 si:dkey-151g10.6 712.88 5343.70
19. bhmt ENSDARG00000013430 702.89 5268.82 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
20. actb2 ENSDARG00000037870 620.27 4649.50 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. tpma ENSDARG00000033683 605.61 4539.61 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
22. apoc2 ENSDARG00000092155 552.98 4145.10 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
23. eef1a1l1 ENSDARG00000020850 479.03 3590.78 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. ckma ENSDARG00000035327, ENSDARG00000114671 476.36 3570.76 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
25. zgc:153129 zgc:153129 469.70 3520.84
26. ctsla ENSDARG00000007836 465.70 3490.86 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
27. slc43a2b ENSDARG00000061120, ENSDARG00000117188 413.07 3096.35 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
28. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 375.76 2816.67 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
29. pla2g12b ENSDARG00000015662 374.43 2806.70 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
30. ppiaa ENSDARG00000009212 361.10 2706.78 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. hbae1_1 350.44 2626.88 hemoglobin, alpha embryonic 1
32. ckmb ENSDARG00000040565 349.78 2621.93 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
33. mt-co3 ENSDARG00000063912 349.11 2616.91 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
34. tfa ENSDARG00000016771 341.12 2557.01 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
35. hbbe1.1_1 ENSDARG00000113599 340.45 2551.99 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
36. mt-atp6 ENSDARG00000063911 340.45 2551.99 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
37. rpl23 ENSDARG00000053457 327.13 2452.15 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. gamt ENSDARG00000070844, ENSDARG00000109945 312.47 2342.26 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
39. ptmab ENSDARG00000101766 307.80 2307.25 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
40. mt-cyb ENSDARG00000063924 303.81 2277.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. mt-nd4 ENSDARG00000063917 298.48 2237.39 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
42. si:dkey-150i13.2 ENSDARG00000071052 295.15 2212.43 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
43. pvalb9 ENSDARG00000071601, ENSDARG00000113946 289.82 2172.47 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
44. APOB APOB 289.15 2167.45
45. actb1 ENSDARG00000037746, ENSDARG00000113649 284.49 2132.52 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
46. sepp1a 284.49 2132.52 selenoprotein P, plasma, 1a
47. zgc:112425 zgc:112425 263.17 1972.71
48. actc1b ENSDARG00000099197 261.83 1962.66 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
49. rbp4 ENSDARG00000101199 250.51 1877.81 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
50. mt-nd2 ENSDARG00000063899 246.51 1847.82 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
51. pvalb1 ENSDARG00000037789 238.51 1787.86 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
52. AL935210.1 ENSDARG00000088330 234.52 1757.95 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
53. mylz3 ENSDARG00000017441 225.19 1688.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
54. atp2a1 ENSDARG00000020574 220.53 1653.08 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
55. rpl11 ENSDARG00000043509 220.53 1653.08 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. fetub ENSDARG00000053973 209.87 1573.17 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
57. rpl10a ENSDARG00000042905, ENSDARG00000115649 207.87 1558.18 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
58. eef2b ENSDARG00000100371, ENSDARG00000109247 205.87 1543.19 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
59. rplp1 ENSDARG00000021864 204.54 1533.22 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 199.21 1493.27 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. hspa8 ENSDARG00000068992, ENSDARG00000114726 195.88 1468.30 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
62. paics ENSDARG00000033539 191.88 1438.32 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
63. btf3 ENSDARG00000035400, ENSDARG00000116462 191.21 1433.30 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
64. gapdh ENSDARG00000043457 191.21 1433.30 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
65. mt-nd1 ENSDARG00000063895 190.55 1428.35 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
66. prdx5 ENSDARG00000055064 188.55 1413.36 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
67. apoea ENSDARG00000102004 181.88 1363.36 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
68. aldob ENSDARG00000053684 181.22 1358.41 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
69. rps23 ENSDARG00000021838 180.55 1353.39 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
70. hmga1a ENSDARG00000028335 177.22 1328.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
71. ahcy ENSDARG00000005191 176.55 1323.41 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
72. mthfd1l ENSDARG00000042221, ENSDARG00000110473 173.22 1298.45 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
73. rplp2 ENSDARG00000101406 171.22 1283.45 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
74. zgc:92533 zgc:92533 171.22 1283.45
75. rps20 ENSDARG00000036044 169.89 1273.48 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. rps15 ENSDARG00000070849, ENSDARG00000110979 165.23 1238.55 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
77. tnni2a.4 ENSDARG00000029069 165.23 1238.55 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
78. AC024175.17 AC024175.17 163.90 1228.58
79. tnnc2 ENSDARG00000070835, ENSDARG00000111155 163.90 1228.58 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
80. ldhba ENSDARG00000019644 161.23 1208.57 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
81. rpl19 ENSDARG00000013307 157.90 1183.61 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
82. rps27.1 ENSDARG00000023298 157.90 1183.61 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. icn ENSDARG00000009978 155.90 1168.62 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
84. fabp2 ENSDARG00000006427, ENSDARG00000110230 155.23 1163.59 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
85. rpl27 ENSDARG00000015128 153.90 1153.62 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. rpl9 ENSDARG00000037350, ENSDARG00000112384 150.57 1128.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
87. rps14 ENSDARG00000036629 149.90 1123.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
88. rps5 ENSDARG00000043453 149.24 1118.69 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
89. gpx4a ENSDARG00000068478 147.91 1108.72 glutathione peroxidase 4a [Source:ZFIN;Acc:ZDB-GENE-030410-2]
90. si:busm1-118j2.5 si:busm1-118j2.5 147.24 1103.70
91. npc2 ENSDARG00000090912 145.24 1088.71 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
92. rps15a ENSDARG00000010160 144.57 1083.69 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
93. serpina1l ENSDARG00000090850 144.57 1083.69 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, like [Source:ZFIN;Acc:ZDB-GENE-040721-3]
94. rps27a ENSDARG00000032725, ENSDARG00000114059 143.91 1078.74 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
95. rps9 ENSDARG00000011405, ENSDARG00000113248 142.58 1068.77 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. rpl18a ENSDARG00000025073 141.24 1058.73 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
97. pabpc1a ENSDARG00000017219 140.58 1053.78 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
98. rpl7 ENSDARG00000007320 139.91 1048.76 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
99. rps2 ENSDARG00000077291 137.25 1028.82 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
100. acta1b ENSDARG00000055618 136.58 1023.79 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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