Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s20.

Sample reads: 133,405. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21446.13 160759.36
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1828.97 13709.89 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1585.08 11881.70 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1267.27 9499.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. apobb apobb 1099.06 8238.51
6. apoc1l apoc1l 1095.08 8208.68
7. apoa2 ENSDARG00000015866 1063.65 7973.08 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
8. hbbe3 ENSDARG00000038147, ENSDARG00000109344 912.71 6841.64 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
9. hbae3 ENSDARG00000079305 887.04 6649.22 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
10. si:dkey-151g10.6 si:dkey-151g10.6 798.51 5985.60
11. actb2 ENSDARG00000037870 794.53 5955.77 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. hbbe1.1 ENSDARG00000113599 767.53 5753.38 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
13. eef1a1l1 ENSDARG00000020850 711.76 5335.33 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. zgc:112425 zgc:112425 690.95 5179.33
15. ptmab ENSDARG00000101766 679.45 5093.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 671.48 5033.39 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. mt-co3 ENSDARG00000063912 667.94 5006.85 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. apoa1b ENSDARG00000101324 665.28 4986.91 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
19. ppiaa ENSDARG00000009212 623.23 4671.71 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
20. tpma ENSDARG00000033683 555.06 4160.71 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
21. hmga1a ENSDARG00000028335 551.08 4130.87 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
22. mt-atp6 ENSDARG00000063911 538.69 4038.00 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. ckma ENSDARG00000035327, ENSDARG00000114671 507.70 3805.70 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. mt-nd2 ENSDARG00000063899 455.91 3417.48 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
25. apoa1a ENSDARG00000012076, ENSDARG00000110395 443.52 3324.61 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
26. mt-cyb ENSDARG00000063924 442.19 3314.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. hspa8 ENSDARG00000068992, ENSDARG00000114726 406.34 3045.91 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 404.13 3029.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. mt-nd4 ENSDARG00000063917 386.86 2899.89 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
30. rpl23 ENSDARG00000053457 373.58 2800.34 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. hbbe1.1_1 ENSDARG00000113599 362.52 2717.44 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
32. ckmb ENSDARG00000040565 331.09 2481.84 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 324.01 2428.77 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. apoeb ENSDARG00000040295 322.68 2418.80 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
35. AL954137.2 ENSDARG00000114408 318.25 2385.59
36. apoa4 apoa4 304.98 2286.12
37. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 304.09 2279.45 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
38. hmgn2 ENSDARG00000099572 302.76 2269.48 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
39. mt-co1 ENSDARG00000063905 300.55 2252.91 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 295.24 2213.11 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. hsp90ab1 ENSDARG00000029150 293.91 2203.14 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
42. hbae1_1 290.37 2176.60 hemoglobin, alpha embryonic 1
43. mt-nd1 ENSDARG00000063895 285.50 2140.10 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
44. bhmt ENSDARG00000013430 282.84 2120.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
45. id1 ENSDARG00000040764 277.09 2077.06 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
46. rps23 ENSDARG00000021838 268.24 2010.72 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
47. zgc:161979_1 zgc:161979_1 264.70 1984.18
48. pvalb1 ENSDARG00000037789 253.63 1901.20 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
49. zgc:153129 zgc:153129 251.42 1884.63
50. pnrc2 ENSDARG00000053291, ENSDARG00000112537 246.55 1848.13 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
51. rps20 ENSDARG00000036044 240.79 1804.95 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 239.47 1795.06 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. zgc:161979 zgc:161979 235.92 1768.45
54. si:dkeyp-86f7.3 si:dkeyp-86f7.3 235.04 1761.85
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 233.71 1751.88 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. atp2a1 ENSDARG00000020574 231.94 1738.61 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
57. rpl9 ENSDARG00000037350, ENSDARG00000112384 231.50 1735.32 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
58. rpl11 ENSDARG00000043509 226.63 1698.81 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
59. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 226.19 1695.51 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
60. cirbp cirbp 225.74 1692.14
61. cfl1 ENSDARG00000021124 219.99 1649.04 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 218.66 1639.07 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. rps2 ENSDARG00000077291 218.22 1635.77 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 212.91 1595.97 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. si:ch1073-429i10.3 212.47 1592.67 si:ch1073-429i10.3, transcript variant X2
66. h3f3a 211.58 1586.00 H3 histone, family 3A, transcript variant X1
67. rps15a ENSDARG00000010160 208.92 1566.06 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
68. rplp1 ENSDARG00000021864 207.15 1552.79 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
69. zgc:92533 zgc:92533 203.17 1522.95
70. khdrbs1a ENSDARG00000052856 201.84 1512.98 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
71. rpl8 ENSDARG00000014867 201.84 1512.98 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 199.19 1493.12 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. hnrnpab hnrnpab 198.74 1489.75
74. rps9 ENSDARG00000011405, ENSDARG00000113248 185.46 1390.20 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. rpl26 ENSDARG00000102317 183.25 1373.63 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
76. rplp2 ENSDARG00000101406 183.25 1373.63 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
77. rpl27 ENSDARG00000015128 181.04 1357.07 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. eif5a ENSDARG00000017235 179.27 1343.80 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
79. tnni2a.4 ENSDARG00000029069 179.27 1343.80 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
80. AL935210.1 ENSDARG00000088330 177.94 1333.83 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
81. rps27.1 ENSDARG00000023298 176.17 1320.56 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
82. actc1b ENSDARG00000099197 174.84 1310.59 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
83. rpl18a ENSDARG00000025073 173.07 1297.33 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
84. eef1g ENSDARG00000056119 169.97 1274.09 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 169.53 1270.79 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. ptmaa ENSDARG00000021113, ENSDARG00000110479 169.09 1267.49 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
87. si:ch211-226o13.2 169.09 1267.49 si:ch211-226o13.2
88. fkbp1aa ENSDARG00000022684 166.87 1250.85 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
89. mylz3 ENSDARG00000017441 166.87 1250.85 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
90. si:dkey-150i13.2 ENSDARG00000071052 166.87 1250.85 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
91. faua ENSDARG00000099022 162.89 1221.02 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. slc43a2b ENSDARG00000061120, ENSDARG00000117188 158.91 1191.18 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
93. rpl7 ENSDARG00000007320 156.69 1174.54 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
94. rpl19 ENSDARG00000013307 155.37 1164.65 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
95. rps6 ENSDARG00000019778 152.27 1141.41 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
96. pcna ENSDARG00000054155 151.82 1138.04 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
97. rps24 ENSDARG00000039347 151.38 1134.74 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
98. hnrnpa0a ENSDARG00000089302 150.94 1131.44 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
99. rpsa ENSDARG00000019181 148.73 1114.87 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
100. tnnc2 ENSDARG00000070835, ENSDARG00000111155 148.73 1114.87 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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