Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s2.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14323.65 107372.59
2. eef2b ENSDARG00000100371, ENSDARG00000109247 1817.18 13621.90 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
3. hmga1a ENSDARG00000028335 1389.61 10416.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1282.72 9615.49 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. mt-co2 ENSDARG00000063908 1068.93 8012.89 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ppiaa ENSDARG00000009212 1068.93 8012.89 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
7. hmgn2 ENSDARG00000099572 962.04 7211.62 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
8. mt-atp6 ENSDARG00000063911 855.14 6410.28 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-co3 ENSDARG00000063912 855.14 6410.28 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. mt-nd4 ENSDARG00000063917 855.14 6410.28 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. ptmab ENSDARG00000101766 855.14 6410.28 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
12. tmsb4x ENSDARG00000077777 855.14 6410.28 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. tubb5 ENSDARG00000037997 855.14 6410.28 tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
14. cirbp cirbp 748.25 5609.01
15. mt-co1 ENSDARG00000063905 748.25 5609.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
16. mt-cyb ENSDARG00000063924 748.25 5609.01 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
17. AL954137.2 ENSDARG00000114408 641.36 4807.75
18. eef1a1l1 ENSDARG00000020850 641.36 4807.75 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. marcksl1b ENSDARG00000035715 641.36 4807.75 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
20. mt-nd1 ENSDARG00000063895 641.36 4807.75 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. mt-nd2 ENSDARG00000063899 641.36 4807.75 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 641.36 4807.75 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. rpl26 ENSDARG00000102317 641.36 4807.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
24. rplp0 ENSDARG00000051783 641.36 4807.75 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
25. TUBA1A ENSDARG00000001889 534.46 4006.41 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 534.46 4006.41 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. actb2 ENSDARG00000037870 534.46 4006.41 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
28. hmgb3a ENSDARG00000056725 534.46 4006.41 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
29. hnrnpa0a ENSDARG00000089302 534.46 4006.41 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
30. hsp90ab1 ENSDARG00000029150 534.46 4006.41 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
31. pnrc2 ENSDARG00000053291, ENSDARG00000112537 534.46 4006.41 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
32. ptmaa ENSDARG00000021113, ENSDARG00000110479 534.46 4006.41 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
33. rpl34 ENSDARG00000029500 534.46 4006.41 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
34. rps12 ENSDARG00000036875, ENSDARG00000115157 534.46 4006.41 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
35. tuba8l4 ENSDARG00000006260 534.46 4006.41 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
36. zgc:153129 zgc:153129 534.46 4006.41
37. arih2 ENSDARG00000012848 427.57 3205.14 ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
38. atp5a1 427.57 3205.14 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
39. atp6v1d ENSDARG00000011175 427.57 3205.14 ATPase H+ transporting V1 subunit D [Source:ZFIN;Acc:ZDB-GENE-040426-727]
40. gpm6aa ENSDARG00000055455, ENSDARG00000110942 427.57 3205.14 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
41. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 427.57 3205.14 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
42. hmgn3 ENSDARG00000036754, ENSDARG00000116728 427.57 3205.14 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
43. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 427.57 3205.14 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
44. hnrnpab hnrnpab 427.57 3205.14
45. hspa8 ENSDARG00000068992, ENSDARG00000114726 427.57 3205.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
46. id1 ENSDARG00000040764 427.57 3205.14 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
47. rpl21 ENSDARG00000010516, ENSDARG00000110263 427.57 3205.14 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
48. rpl9 ENSDARG00000037350, ENSDARG00000112384 427.57 3205.14 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
49. rplp1 ENSDARG00000021864 427.57 3205.14 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rps2 ENSDARG00000077291 427.57 3205.14 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
51. si:dkeyp-86f7.3 si:dkeyp-86f7.3 427.57 3205.14
52. zgc:92533 zgc:92533 427.57 3205.14
53. DVL3 320.68 2403.87 dishevelled segment polarity protein 3
54. LPL_1 LPL_1 320.68 2403.87
55. RPS17L RPS17L 320.68 2403.87
56. Sep-06 Sep-06 320.68 2403.87
57. barhl2 ENSDARG00000104361, ENSDARG00000114681, ENSDARG00000115723 320.68 2403.87 BarH-like homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-050913-153]
58. bcam ENSDARG00000090190 320.68 2403.87 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
59. celsr2 ENSDARG00000019726, ENSDARG00000094388 320.68 2403.87 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
60. cnot6 cnot6 320.68 2403.87
61. cul3a ENSDARG00000038967 320.68 2403.87 cullin 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3376]
62. ebf3 ebf3 320.68 2403.87
63. eif3c ENSDARG00000016443 320.68 2403.87 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
64. elmo1 ENSDARG00000098753 320.68 2403.87 engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
65. hmga2 ENSDARG00000069912 320.68 2403.87 high mobility group AT-hook 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3148]
66. hp1bp3 ENSDARG00000044669 320.68 2403.87 heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
67. ift46 ENSDARG00000011240 320.68 2403.87 intraflagellar transport 46 homolog (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-080102-3]
68. impdh1b ENSDARG00000029524 320.68 2403.87 IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
69. puf60b ENSDARG00000001241 320.68 2403.87 poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
70. rab5aa ENSDARG00000018602 320.68 2403.87 RAB5A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-030131-139]
71. rpl14 ENSDARG00000103433 320.68 2403.87 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
72. rpl39 ENSDARG00000036316, ENSDARG00000117167 320.68 2403.87 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
73. rpl6 ENSDARG00000058451 320.68 2403.87 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
74. rpl7 ENSDARG00000007320 320.68 2403.87 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
75. rps15 ENSDARG00000070849, ENSDARG00000110979 320.68 2403.87 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. rps15a ENSDARG00000010160 320.68 2403.87 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
77. rps20 ENSDARG00000036044 320.68 2403.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
78. rps21 ENSDARG00000025850 320.68 2403.87 ribosomal protein S21 [Source:ZFIN;Acc:ZDB-GENE-040426-1102]
79. rps23 ENSDARG00000021838 320.68 2403.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
80. rps27.1 ENSDARG00000023298 320.68 2403.87 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
81. si:dkey-151g10.6 si:dkey-151g10.6 320.68 2403.87
82. slc1a2b ENSDARG00000102453 320.68 2403.87 solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
83. slc25a3b ENSDARG00000025566 320.68 2403.87 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3b [Source:ZFIN;Acc:ZDB-GENE-040426-1916]
84. ywhabl ENSDARG00000040287 320.68 2403.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
85. ywhae1 ENSDARG00000006399, ENSDARG00000109636, ENSDARG00000109789 320.68 2403.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-779]
86. zgc:112425 zgc:112425 320.68 2403.87
87. BX322612.1 BX322612.1 213.79 1602.61
88. BX682552.2 BX682552.2 213.79 1602.61
89. BX957337.1 BX957337.1 213.79 1602.61
90. CABZ01013938.1 CABZ01013938.1 213.79 1602.61
91. CD99L2 ENSDARG00000056722 213.79 1602.61 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
92. CDCA4 ENSDARG00000042319 213.79 1602.61 cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
93. CR354611.2 CR354611.2 213.79 1602.61
94. CR387996.1 ENSDARG00000097774 213.79 1602.61
95. DEDD ENSDARG00000029783 213.79 1602.61 death effector domain containing [Source:ZFIN;Acc:ZDB-GENE-040718-386]
96. GATAD2B ENSDARG00000005834 213.79 1602.61 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
97. HNRNPAB HNRNPAB 213.79 1602.61
98. LDLRAD4 LDLRAD4 213.79 1602.61
99. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 213.79 1602.61 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
100. LTN1 ENSDARG00000003984 213.79 1602.61 listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:13082]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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