Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s19.

Sample reads: 133,385. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 34264.88 256887.61
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2486.58 18642.17 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2038.11 15279.94 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1873.94 14049.14 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
5. hbae3 ENSDARG00000079305 1138.51 8535.54 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
6. hbbe1.1 ENSDARG00000113599 1129.17 8465.51 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
7. apoc1l apoc1l 936.97 7024.57
8. mt-co2 ENSDARG00000063908 847.55 6354.18 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. si:dkey-151g10.6 si:dkey-151g10.6 844.88 6334.16
10. actb2 ENSDARG00000037870 706.07 5293.49 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ptmab ENSDARG00000101766 628.65 4713.06 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
12. pvalb2 ENSDARG00000002768, ENSDARG00000114085 595.28 4462.88 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
13. eef1a1l1 ENSDARG00000020850 575.26 4312.79 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. tpma ENSDARG00000033683 569.92 4272.75 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
15. apoa2 ENSDARG00000015866 557.91 4182.71 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
16. hbbe1.1_1 ENSDARG00000113599 551.24 4132.71 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
17. apobb apobb 549.90 4122.66
18. ckma ENSDARG00000035327, ENSDARG00000114671 543.23 4072.66 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
19. zgc:112425 zgc:112425 479.16 3592.32
20. ppiaa ENSDARG00000009212 439.12 3292.13 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. apoa1b ENSDARG00000101324 433.78 3252.10 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. rpl23 ENSDARG00000053457 416.43 3122.02 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. actb1 ENSDARG00000037746, ENSDARG00000113649 395.08 2961.96 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. hbae1_1 376.39 2821.84 hemoglobin, alpha embryonic 1
25. hspa8 ENSDARG00000068992, ENSDARG00000114726 373.72 2801.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
26. hmga1a ENSDARG00000028335 368.38 2761.79 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
27. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 361.71 2711.78 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
28. mt-co3 ENSDARG00000063912 347.03 2601.72 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
29. mt-nd4 ENSDARG00000063917 327.01 2451.63 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
30. rpl36a ENSDARG00000058105, ENSDARG00000112656 324.34 2431.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
31. rplp2 ENSDARG00000101406 324.34 2431.61 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
32. si:dkey-150i13.2 ENSDARG00000071052 324.34 2431.61 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
33. hmgn2 ENSDARG00000099572 313.66 2351.54 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 309.65 2321.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. ckmb ENSDARG00000040565 302.98 2271.47 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
36. rpl11 ENSDARG00000043509 298.98 2241.49 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
37. AL954137.2 ENSDARG00000114408 290.97 2181.43
38. apoa1a ENSDARG00000012076, ENSDARG00000110395 289.63 2171.39 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
39. mt-cyb ENSDARG00000063924 286.96 2151.37 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rps23 ENSDARG00000021838 284.29 2131.35 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
41. eef2b ENSDARG00000100371, ENSDARG00000109247 282.96 2121.38 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
42. zgc:92533 zgc:92533 278.96 2091.39
43. pvalb1 ENSDARG00000037789 266.94 2001.28 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 264.27 1981.26 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. AC024175.17 AC024175.17 261.60 1961.24
46. rps9 ENSDARG00000011405, ENSDARG00000113248 258.94 1941.30 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
47. icn ENSDARG00000009978 257.60 1931.26 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
48. pnrc2 ENSDARG00000053291, ENSDARG00000112537 254.93 1911.24 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
49. rps15 ENSDARG00000070849, ENSDARG00000110979 250.93 1881.25 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
50. atp2a1 ENSDARG00000020574 249.59 1871.20 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
51. hsp90ab1 ENSDARG00000029150 237.58 1781.16 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
52. rpl36 ENSDARG00000100588 234.91 1761.15 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
53. mt-atp6 ENSDARG00000063911 229.57 1721.11 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
54. apoa4 apoa4 228.24 1711.14
55. mt-nd2 ENSDARG00000063899 228.24 1711.14 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
56. h3f3a 226.90 1701.09 H3 histone, family 3A, transcript variant X1
57. rps24 ENSDARG00000039347 226.90 1701.09 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
58. rpl27 ENSDARG00000015128 225.57 1691.12 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
59. rps14 ENSDARG00000036629 222.90 1671.11 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
60. rplp1 ENSDARG00000021864 218.89 1641.04 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
61. rps27.1 ENSDARG00000023298 213.55 1601.01 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
62. rps20 ENSDARG00000036044 212.22 1591.04 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
63. zgc:161979_1 zgc:161979_1 212.22 1591.04
64. rps27a ENSDARG00000032725, ENSDARG00000114059 209.55 1571.02 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. zgc:153129 zgc:153129 209.55 1571.02
66. faua ENSDARG00000099022 202.88 1521.01 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
67. AL935210.1 ENSDARG00000088330 200.21 1501.00 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 198.87 1490.95 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. rps12 ENSDARG00000036875, ENSDARG00000115157 197.54 1480.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
70. rpl35a ENSDARG00000088030 192.20 1440.94 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
71. apoeb ENSDARG00000040295 190.86 1430.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
72. si:busm1-118j2.5 si:busm1-118j2.5 190.86 1430.90
73. cyt1l ENSDARG00000036832 188.20 1410.96 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
74. mt-nd1 ENSDARG00000063895 188.20 1410.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
75. rpl39 ENSDARG00000036316, ENSDARG00000117167 184.19 1380.89 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
76. fabp3 ENSDARG00000023290 181.52 1360.88 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
77. fkbp1aa ENSDARG00000022684 181.52 1360.88 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
78. rps2 ENSDARG00000077291 180.19 1350.90 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
79. si:dkeyp-86f7.3 si:dkeyp-86f7.3 178.85 1340.86
80. eif5a ENSDARG00000017235 177.52 1330.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
81. hnrnpab hnrnpab 176.18 1320.84
82. rps5 ENSDARG00000043453 176.18 1320.84 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. zgc:161979 zgc:161979 176.18 1320.84
84. khdrbs1a ENSDARG00000052856 174.85 1310.87 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
85. rpl18a ENSDARG00000025073 173.51 1300.82 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
86. cirbp cirbp 172.18 1290.85
87. rpl8 ENSDARG00000014867 170.84 1280.81 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
88. bhmt ENSDARG00000013430 168.17 1260.79 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
89. he1a 168.17 1260.79 hatching enzyme 1a, transcript variant X1
90. id1 ENSDARG00000040764 168.17 1260.79 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
91. rps15a ENSDARG00000010160 168.17 1260.79 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. slc4a1a ENSDARG00000012881 166.84 1250.82 solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
93. cfl1 ENSDARG00000021124 165.51 1240.85 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
94. ptmaa ENSDARG00000021113, ENSDARG00000110479 165.51 1240.85 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
95. rpl28 ENSDARG00000005791 162.84 1220.83 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
96. rpl26 ENSDARG00000102317 161.50 1210.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
97. pabpc1a ENSDARG00000017219 157.50 1180.80 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
98. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 156.16 1170.75 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
99. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 153.49 1150.73 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
100. rpl30 ENSDARG00000035871, ENSDARG00000109253 153.49 1150.73 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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