Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo1, section s18.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20395.91 152895.06
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3367.19 25241.66 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 1902.08 14258.67 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoa2 ENSDARG00000015866 1619.34 12139.15 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
5. apoc1l apoc1l 1580.78 11850.09
6. apoa1a ENSDARG00000012076, ENSDARG00000110395 1439.41 10790.33 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
7. hbae3 ENSDARG00000079305 1118.11 8381.75 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
8. mt-co2 ENSDARG00000063908 1079.56 8092.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. apobb apobb 1002.45 7514.72
10. tpma ENSDARG00000033683 925.33 6936.61 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
11. hbbe1.1 ENSDARG00000113599 899.63 6743.95 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
12. tmsb4x ENSDARG00000077777 848.22 6358.56 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. hbbe3 ENSDARG00000038147, ENSDARG00000109344 822.52 6165.90 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
14. eef2b ENSDARG00000100371, ENSDARG00000109247 732.56 5491.53 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
15. actb2 ENSDARG00000037870 706.85 5298.80 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. mt-atp6 ENSDARG00000063911 694.00 5202.47 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. pvalb2 ENSDARG00000002768, ENSDARG00000114085 655.45 4913.49 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
18. mt-co3 ENSDARG00000063912 591.19 4431.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mt-nd4 ENSDARG00000063917 591.19 4431.77 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. eef1a1l1 ENSDARG00000020850 565.48 4239.04 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. bhmt ENSDARG00000013430 552.63 4142.71 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
22. mt-nd2 ENSDARG00000063899 526.93 3950.06 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. gamt ENSDARG00000070844, ENSDARG00000109945 514.07 3853.65 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
24. mt-cyb ENSDARG00000063924 501.22 3757.32 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. he1a 488.37 3661.00 hatching enzyme 1a, transcript variant X1
26. atp2a1 ENSDARG00000020574 475.52 3564.67 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
27. ppiaa ENSDARG00000009212 462.67 3468.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. actc1b ENSDARG00000099197 449.82 3372.01 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
29. ckma ENSDARG00000035327, ENSDARG00000114671 449.82 3372.01 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
30. ckmb ENSDARG00000040565 449.82 3372.01 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
31. hbbe1.1_1 ENSDARG00000113599 449.82 3372.01 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
32. actb1 ENSDARG00000037746, ENSDARG00000113649 436.96 3275.61 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
33. rpl8 ENSDARG00000014867 411.26 3082.95 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
34. hmga1a ENSDARG00000028335 398.41 2986.62 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. tnnc2 ENSDARG00000070835, ENSDARG00000111155 398.41 2986.62 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
36. hsp90ab1 ENSDARG00000029150 372.70 2793.89 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
37. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 372.70 2793.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
38. pnrc2 ENSDARG00000053291, ENSDARG00000112537 372.70 2793.89 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
39. zgc:161979_1 zgc:161979_1 372.70 2793.89
40. AL935210.1 ENSDARG00000088330 347.00 2601.24 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
41. apoeb ENSDARG00000040295 347.00 2601.24 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 347.00 2601.24 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. zgc:153129 zgc:153129 321.30 2408.58
44. zgc:161979 zgc:161979 321.30 2408.58
45. mt-co1 ENSDARG00000063905 308.44 2312.18 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 308.44 2312.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. zgc:112425 zgc:112425 308.44 2312.18
48. hmgn2 ENSDARG00000099572 295.59 2215.85 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
49. pvalb1 ENSDARG00000037789 295.59 2215.85 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
50. rps12 ENSDARG00000036875, ENSDARG00000115157 295.59 2215.85 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
51. si:dkeyp-86f7.3 si:dkeyp-86f7.3 295.59 2215.85
52. zgc:92533 zgc:92533 295.59 2215.85
53. he1b 282.74 2119.52 hatching enzyme 1b
54. rplp2 ENSDARG00000101406 282.74 2119.52 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
55. wu:fa26c03 282.74 2119.52 wu:fa26c03
56. apoa4 apoa4 269.89 2023.19
57. rpl23 ENSDARG00000053457 269.89 2023.19 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 269.89 2023.19 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rps2 ENSDARG00000077291 269.89 2023.19 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
60. fth1a ENSDARG00000015551 257.04 1926.86 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
61. hbae1_1 257.04 1926.86 hemoglobin, alpha embryonic 1
62. ptmab ENSDARG00000101766 257.04 1926.86 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
63. rpl7 ENSDARG00000007320 257.04 1926.86 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
64. tnni2a.4 ENSDARG00000029069 257.04 1926.86 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
65. CABZ01044814.2 CABZ01044814.2 244.19 1830.54
66. rpl18a ENSDARG00000025073 244.19 1830.54 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
67. AL954137.2 ENSDARG00000114408 231.33 1734.13
68. apoc2 ENSDARG00000092155 231.33 1734.13 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
69. hspa8 ENSDARG00000068992, ENSDARG00000114726 231.33 1734.13 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
70. rpl26 ENSDARG00000102317 231.33 1734.13 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
71. rpl35a ENSDARG00000088030 231.33 1734.13 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
72. rpl36a ENSDARG00000058105, ENSDARG00000112656 231.33 1734.13 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
73. si:dkey-151g10.6 si:dkey-151g10.6 231.33 1734.13
74. acta1b ENSDARG00000055618 218.48 1637.80 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
75. btf3 ENSDARG00000035400, ENSDARG00000116462 218.48 1637.80 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
76. rplp0 ENSDARG00000051783 218.48 1637.80 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps20 ENSDARG00000036044 218.48 1637.80 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
78. rpsa ENSDARG00000019181 218.48 1637.80 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
79. si:busm1-118j2.5 si:busm1-118j2.5 218.48 1637.80
80. cfl1 ENSDARG00000021124 205.63 1541.48 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
81. cyt1l ENSDARG00000036832 205.63 1541.48 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
82. fetub ENSDARG00000053973 205.63 1541.48 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
83. gatm ENSDARG00000036239 205.63 1541.48 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
84. rpl19 ENSDARG00000013307 205.63 1541.48 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
85. rpl36 ENSDARG00000100588 205.63 1541.48 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. rpl5b ENSDARG00000015862, ENSDARG00000109661 205.63 1541.48 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
87. rps14 ENSDARG00000036629 205.63 1541.48 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
88. tnnt3b ENSDARG00000068457 205.63 1541.48 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
89. ATP5B 192.78 1445.15 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
90. col1a1b ENSDARG00000035809 192.78 1445.15 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
91. mt-nd1 ENSDARG00000063895 192.78 1445.15 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
92. pla2g12b ENSDARG00000015662 192.78 1445.15 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
93. rps15 ENSDARG00000070849, ENSDARG00000110979 192.78 1445.15 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
94. rps18 ENSDARG00000100392 192.78 1445.15 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
95. rps25 ENSDARG00000041811 192.78 1445.15 ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
96. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 192.78 1445.15 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
97. rps9 ENSDARG00000011405, ENSDARG00000113248 192.78 1445.15 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
98. myhz1.3 ENSDARG00000067997 179.93 1348.82 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
99. pfn1 ENSDARG00000088091 179.93 1348.82 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
100. rpl11 ENSDARG00000043509 179.93 1348.82 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA