Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s17.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25386.96 190294.05
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2124.13 15921.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 1916.01 14361.91 hatching enzyme 1a, transcript variant X1
4. hbae3 ENSDARG00000079305 1612.70 12088.38 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
5. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1354.18 10150.58 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
6. zgc:174855 ENSDARG00000094559 1262.72 9465.02 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
7. tmsb4x ENSDARG00000077777 1194.13 8950.89 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-co2 ENSDARG00000063908 998.60 7485.25 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. hbbe1.1 ENSDARG00000113599 998.14 7481.80 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
10. si:dkey-151g10.6 si:dkey-151g10.6 812.88 6093.14
11. actb2 ENSDARG00000037870 778.35 5834.31 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. eef1a1l1 ENSDARG00000020850 753.15 5645.42 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. zgc:112425 zgc:112425 722.82 5418.07
14. ptmab ENSDARG00000101766 703.69 5274.68 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
15. CABZ01044814.2 CABZ01044814.2 692.49 5190.72
16. si:dkey-269i1.3 659.83 4945.91 si:dkey-269i1.3
17. he1b 614.10 4603.13 hatching enzyme 1b
18. hbae1_1 596.83 4473.68 hemoglobin, alpha embryonic 1
19. ctslb ENSDARG00000039173, ENSDARG00000074306 587.03 4400.22 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
20. ppiaa ENSDARG00000009212 572.56 4291.76 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. AL935210.1 ENSDARG00000088330 567.90 4256.83 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
22. wu:fa26c03 562.77 4218.38 wu:fa26c03
23. hbbe1.1_1 ENSDARG00000113599 535.70 4015.47 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
24. apoa2 ENSDARG00000015866 524.03 3927.99 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
25. hmga1a ENSDARG00000028335 523.57 3924.54 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
26. apobb apobb 501.64 3760.16
27. mt-co3 ENSDARG00000063912 486.70 3648.18 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
28. apoc1l apoc1l 466.64 3497.81
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 446.57 3347.37 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. rpl10a ENSDARG00000042905, ENSDARG00000115649 414.37 3106.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
31. rpl23 ENSDARG00000053457 404.57 3032.55 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. hsp90ab1 ENSDARG00000029150 395.71 2966.14 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. eef2b ENSDARG00000100371, ENSDARG00000109247 390.58 2927.69 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 376.11 2819.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. icn ENSDARG00000009978 372.84 2794.71 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
36. si:dkey-239j18.3 ENSDARG00000089806 363.98 2728.30 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
37. apoa1b ENSDARG00000101324 362.11 2714.28 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
38. mt-nd4 ENSDARG00000063917 338.78 2539.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
39. mt-atp6 ENSDARG00000063911 332.25 2490.46 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
40. hmgn2 ENSDARG00000099572 316.38 2371.50 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
41. AL954137.2 ENSDARG00000114408 299.11 2242.05
42. mt-cyb ENSDARG00000063924 296.31 2221.06 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
43. rplp1 ENSDARG00000021864 295.38 2214.09 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
44. mt-nd2 ENSDARG00000063899 292.12 2189.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
45. rpl8 ENSDARG00000014867 279.52 2095.21 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. rpl11 ENSDARG00000043509 275.32 2063.73 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
47. rps23 ENSDARG00000021838 271.12 2032.25 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 268.32 2011.26 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. pnrc2 ENSDARG00000053291, ENSDARG00000112537 265.52 1990.27 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 265.05 1986.75 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. apoa1a ENSDARG00000012076, ENSDARG00000110395 264.58 1983.22 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
52. rps20 ENSDARG00000036044 260.38 1951.74 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
53. rpl18a ENSDARG00000025073 255.25 1913.29 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
54. bhmt ENSDARG00000013430 249.65 1871.31 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
55. hnrnpab hnrnpab 242.18 1815.32
56. rpl36 ENSDARG00000100588 240.32 1801.38 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
57. id1 ENSDARG00000040764 238.92 1790.88 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
58. rps15 ENSDARG00000070849, ENSDARG00000110979 236.59 1773.42 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 234.25 1755.88 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. rps12 ENSDARG00000036875, ENSDARG00000115157 227.25 1703.41 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
61. rps27.1 ENSDARG00000023298 225.85 1692.91 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
62. rps26l ENSDARG00000030408 224.92 1685.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
63. cfl1 ENSDARG00000021124 224.45 1682.42 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
64. si:dkeyp-86f7.3 si:dkeyp-86f7.3 224.45 1682.42
65. zgc:92533 zgc:92533 223.99 1678.97
66. rplp2 ENSDARG00000101406 220.72 1654.46 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 220.25 1650.94 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. rps15a ENSDARG00000010160 220.25 1650.94 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. si:busm1-118j2.5 si:busm1-118j2.5 219.32 1643.97
70. cirbp cirbp 217.92 1633.47
71. mt-co1 ENSDARG00000063905 216.05 1619.45 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 215.59 1616.01 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. rps5 ENSDARG00000043453 215.12 1612.48 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. rps9 ENSDARG00000011405, ENSDARG00000113248 215.12 1612.48 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. eif5a ENSDARG00000017235 212.79 1595.02 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
76. rpl26 ENSDARG00000102317 211.85 1587.97 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
77. rpsa ENSDARG00000019181 205.32 1539.03 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
78. khdrbs1a ENSDARG00000052856 200.19 1500.57 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
79. fabp3 ENSDARG00000023290 199.72 1497.05 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. rpl18 ENSDARG00000029533 199.72 1497.05 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
81. rpl27 ENSDARG00000015128 199.72 1497.05 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. rps2 ENSDARG00000077291 197.85 1483.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
83. rpl22 ENSDARG00000070437 193.19 1448.10 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
84. si:dkey-26g8.5 ENSDARG00000089750 191.79 1437.61 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
85. krt8 ENSDARG00000058358, ENSDARG00000109279 191.32 1434.08 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
86. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 190.39 1427.11 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
87. eef1g ENSDARG00000056119 189.92 1423.59 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
88. rps14 ENSDARG00000036629 189.92 1423.59 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
89. faua ENSDARG00000099022 186.66 1399.15 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. mt-nd1 ENSDARG00000063895 185.72 1392.11 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
91. rps6 ENSDARG00000019778 185.72 1392.11 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 184.79 1385.14 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. fth1a ENSDARG00000015551 183.86 1378.17 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
94. h3f3a 183.86 1378.17 H3 histone, family 3A, transcript variant X1
95. zgc:161979_1 zgc:161979_1 182.92 1371.12
96. hbae1 175.92 1318.65 hemoglobin, alpha embryonic 1
97. fkbp1aa ENSDARG00000022684 174.52 1308.16 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
98. pabpc1a ENSDARG00000017219 174.06 1304.71 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
99. zgc:161979 zgc:161979 173.59 1301.19
100. si:dkey-150i13.2 ENSDARG00000071052 172.66 1294.21 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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