Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s15.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20662.03 154891.65
2. he1a 2657.87 19924.56 hatching enzyme 1a, transcript variant X1
3. zgc:174855 ENSDARG00000094559 2127.74 15950.47 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1517.35 11374.72 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. tmsb4x ENSDARG00000077777 1233.05 9243.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. si:dkey-269i1.3 1056.90 7922.99 si:dkey-269i1.3
7. mt-co2 ENSDARG00000063908 1049.10 7864.51 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. si:dkey-151g10.6 si:dkey-151g10.6 1044.08 7826.88
9. CABZ01044814.2 CABZ01044814.2 1002.28 7513.53
10. ptmab ENSDARG00000101766 967.71 7254.38 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
11. zgc:112425 zgc:112425 929.25 6966.07
12. ppiaa ENSDARG00000009212 888.56 6661.04 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. actb2 ENSDARG00000037870 878.52 6585.77 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. he1b 849.54 6368.52 hatching enzyme 1b
15. eef1a1l1 ENSDARG00000020850 822.22 6163.72 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. ctslb ENSDARG00000039173, ENSDARG00000074306 795.47 5963.19 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
17. si:dkey-239j18.3 ENSDARG00000089806 554.65 4157.90 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 527.34 3953.17 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. hmga1a ENSDARG00000028335 515.63 3865.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
20. wu:fa26c03 511.73 3836.15 wu:fa26c03
21. apoa2 ENSDARG00000015866 493.33 3698.22 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 461.00 3455.86 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. mt-co3 ENSDARG00000063912 439.26 3292.89 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
24. icn ENSDARG00000009978 437.03 3276.17 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
25. apobb apobb 436.47 3271.97
26. AL954137.2 ENSDARG00000114408 429.79 3221.89
27. eef2b ENSDARG00000100371, ENSDARG00000109247 421.98 3163.35 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
28. actb1 ENSDARG00000037746, ENSDARG00000113649 415.29 3113.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. hbae3 ENSDARG00000079305 399.68 2996.18 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
30. rps23 ENSDARG00000021838 392.99 2946.03 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
31. rpl36a ENSDARG00000058105, ENSDARG00000112656 391.88 2937.70 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
32. hsp90ab1 ENSDARG00000029150 387.98 2908.47 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. rplp1 ENSDARG00000021864 377.39 2829.08 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
34. hmgn2 ENSDARG00000099572 369.58 2770.53 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
35. apoc1l apoc1l 368.47 2762.21
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 368.47 2762.21 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. id1 ENSDARG00000040764 350.07 2624.28 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
38. rpl11 ENSDARG00000043509 343.94 2578.33 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
39. rpl23 ENSDARG00000053457 333.91 2503.14 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. apoa1b ENSDARG00000101324 332.79 2494.74 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
41. rps20 ENSDARG00000036044 324.99 2436.27 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 315.51 2365.20 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. mt-nd4 ENSDARG00000063917 312.72 2344.29 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
44. rps27.1 ENSDARG00000023298 308.26 2310.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
45. hbbe3 ENSDARG00000038147, ENSDARG00000109344 304.36 2281.62 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
46. mt-atp6 ENSDARG00000063911 301.02 2256.58 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
47. rps15 ENSDARG00000070849, ENSDARG00000110979 301.02 2256.58 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
48. rps9 ENSDARG00000011405, ENSDARG00000113248 298.23 2235.66 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
49. rpl27 ENSDARG00000015128 297.11 2227.27 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
50. rpl18a ENSDARG00000025073 287.08 2152.08 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. si:dkey-26g8.5 ENSDARG00000089750 286.52 2147.88 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
52. rplp2 ENSDARG00000101406 283.18 2122.84 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
53. si:dkeyp-86f7.3 si:dkeyp-86f7.3 282.62 2118.64
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 282.06 2114.45 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. rpl8 ENSDARG00000014867 280.39 2101.93 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. mt-cyb ENSDARG00000063924 278.16 2085.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
57. krt8 ENSDARG00000058358, ENSDARG00000109279 276.49 2072.69 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
58. mt-nd2 ENSDARG00000063899 272.59 2043.45 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
59. h3f3a 268.69 2014.22 H3 histone, family 3A, transcript variant X1
60. fkbp1aa ENSDARG00000022684 266.46 1997.50 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
61. rps2 ENSDARG00000077291 264.78 1984.91 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
62. faua ENSDARG00000099022 259.21 1943.15 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
63. hbbe1.1 ENSDARG00000113599 258.65 1938.95 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
64. rps14 ENSDARG00000036629 255.31 1913.92 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 254.19 1905.52 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. rpl19 ENSDARG00000013307 251.40 1884.60 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rps12 ENSDARG00000036875, ENSDARG00000115157 248.06 1859.57 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
68. rpl7 ENSDARG00000007320 246.95 1851.25 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. rpl36 ENSDARG00000100588 245.83 1842.85 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
70. pnrc2 ENSDARG00000053291, ENSDARG00000112537 244.16 1830.33 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
71. rps15a ENSDARG00000010160 241.37 1809.42 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
72. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 239.14 1792.70 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
73. rpsa ENSDARG00000019181 238.03 1784.38 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
74. cfl1 ENSDARG00000021124 237.47 1780.18 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
75. apoa1a ENSDARG00000012076, ENSDARG00000110395 236.91 1775.98 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
76. rpl26 ENSDARG00000102317 236.91 1775.98 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
77. mt-co1 ENSDARG00000063905 234.12 1755.07 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
78. cirbp cirbp 233.01 1746.75
79. rps5 ENSDARG00000043453 230.78 1730.03 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. khdrbs1a ENSDARG00000052856 225.21 1688.27 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
81. eif5a ENSDARG00000017235 224.09 1679.88 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
82. eef1g ENSDARG00000056119 221.30 1658.96 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
83. hnrnpab hnrnpab 221.30 1658.96
84. ptmaa ENSDARG00000021113, ENSDARG00000110479 220.19 1650.64 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
85. zgc:161979 zgc:161979 210.71 1579.57
86. rps26l ENSDARG00000030408 206.81 1550.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
87. zgc:174153 ENSDARG00000079376 203.47 1525.30 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
88. zgc:161979_1 zgc:161979_1 202.35 1516.90
89. rpl35a ENSDARG00000088030 201.24 1508.58 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
90. rps24 ENSDARG00000039347 201.24 1508.58 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 200.12 1500.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. rpl35 ENSDARG00000018334 199.56 1495.99 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
93. krt18 ENSDARG00000018404, ENSDARG00000109528 197.89 1483.47 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
94. rps6 ENSDARG00000019778 197.89 1483.47 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
95. rpl6 ENSDARG00000058451 191.20 1433.32 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. rplp2l ENSDARG00000011201 188.97 1416.60 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
97. fabp3 ENSDARG00000023290 188.41 1412.40 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
98. rpl18 ENSDARG00000029533 186.18 1395.69 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
99. pabpc1a ENSDARG00000017219 183.95 1378.97 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
100. pcna ENSDARG00000054155 182.28 1366.45 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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