Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s13.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16697.10 125170.55
2. tmsb4x ENSDARG00000077777 1619.36 12139.60 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. mt-co2 ENSDARG00000063908 1209.65 9068.19 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. zgc:112425 zgc:112425 1188.95 8913.02
5. si:dkey-151g10.6 si:dkey-151g10.6 1166.73 8746.44
6. ptmab ENSDARG00000101766 1043.15 7820.02 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
7. ppiaa ENSDARG00000009212 1013.02 7594.15 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. eef1a1l1 ENSDARG00000020850 966.14 7242.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. actb2 ENSDARG00000037870 948.79 7112.65 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. krt4 ENSDARG00000017624, ENSDARG00000115790 877.87 6580.99 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
11. hmga1a ENSDARG00000028335 745.15 5586.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
12. rpl23 ENSDARG00000053457 650.48 4876.35 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 627.35 4702.96 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. hspa8 ENSDARG00000068992, ENSDARG00000114726 581.08 4356.09 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
15. hsp90ab1 ENSDARG00000029150 539.99 4048.06 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
16. AL954137.2 ENSDARG00000114408 502.55 3767.39
17. mt-co3 ENSDARG00000063912 501.33 3758.24 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 497.07 3726.31 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. hmgn2 ENSDARG00000099572 466.63 3498.11 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 462.68 3468.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. rpl36a ENSDARG00000058105, ENSDARG00000112656 428.89 3215.19 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
22. id1 ENSDARG00000040764 419.15 3142.18 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. hbae3 ENSDARG00000079305 414.28 3105.67 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
24. mt-atp6 ENSDARG00000063911 397.84 2982.43 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
25. rplp1 ENSDARG00000021864 396.32 2971.03 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
26. rps20 ENSDARG00000036044 395.71 2966.46 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
27. rps23 ENSDARG00000021838 382.01 2863.75 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
28. rpl11 ENSDARG00000043509 365.27 2738.26 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
29. rpl9 ENSDARG00000037350, ENSDARG00000112384 362.53 2717.72 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
30. mt-nd4 ENSDARG00000063917 359.79 2697.18 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 356.14 2669.82 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. btf3 ENSDARG00000035400, ENSDARG00000116462 351.88 2637.88 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. rpl36 ENSDARG00000100588 350.35 2626.41 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
34. rps15 ENSDARG00000070849, ENSDARG00000110979 345.79 2592.23 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
35. rps27.1 ENSDARG00000023298 344.88 2585.41 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
36. h3f3a 330.26 2475.81 H3 histone, family 3A, transcript variant X1
37. rpl18a ENSDARG00000025073 328.74 2464.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
38. apoa2 ENSDARG00000015866 326.31 2446.20 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
39. cirbp cirbp 317.48 2380.00
40. rps27a ENSDARG00000032725, ENSDARG00000114059 316.57 2373.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
41. si:dkeyp-86f7.3 si:dkeyp-86f7.3 316.57 2373.18
42. rps9 ENSDARG00000011405, ENSDARG00000113248 316.26 2370.86 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
43. cfl1 ENSDARG00000021124 312.31 2341.25 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
44. rps5 ENSDARG00000043453 307.74 2306.99 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
45. hnrnpab hnrnpab 305.91 2293.27
46. mt-cyb ENSDARG00000063924 303.17 2272.73 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. mt-nd2 ENSDARG00000063899 301.04 2256.76 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
48. fkbp1aa ENSDARG00000022684 299.52 2245.36 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
49. rpl8 ENSDARG00000014867 298.91 2240.79 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
50. rps15a ENSDARG00000010160 297.70 2231.72 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
51. rpl27 ENSDARG00000015128 296.17 2220.25 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
52. rps12 ENSDARG00000036875, ENSDARG00000115157 294.65 2208.86 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
53. pnrc2 ENSDARG00000053291, ENSDARG00000112537 294.35 2206.61 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
54. rplp2 ENSDARG00000101406 292.52 2192.89 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
55. rpl7 ENSDARG00000007320 290.39 2176.92 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
56. hbbe3 ENSDARG00000038147, ENSDARG00000109344 285.82 2142.66 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
57. rpl26 ENSDARG00000102317 285.21 2138.09 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
58. rps19 ENSDARG00000030602 282.48 2117.62 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
59. khdrbs1a ENSDARG00000052856 279.74 2097.08 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
60. apobb apobb 277.30 2078.79
61. rps2 ENSDARG00000077291 277.30 2078.79 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
62. rpl18 ENSDARG00000029533 274.26 2056.00 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. h3f3d ENSDARG00000045248 273.04 2046.86 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
64. rpl19 ENSDARG00000013307 270.60 2028.56 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. rps14 ENSDARG00000036629 267.56 2005.78 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
66. eef1g ENSDARG00000056119 265.43 1989.81 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
67. rpl5b ENSDARG00000015862, ENSDARG00000109661 263.30 1973.84 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
68. faua ENSDARG00000099022 262.08 1964.69 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
69. rps26l ENSDARG00000030408 255.08 1912.22 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
70. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 254.78 1909.97 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
71. ptmaa ENSDARG00000021113, ENSDARG00000110479 254.17 1905.40 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
72. mt-co1 ENSDARG00000063905 252.95 1896.25 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
73. si:ch1073-429i10.3 250.82 1880.28 si:ch1073-429i10.3, transcript variant X2
74. rps24 ENSDARG00000039347 249.91 1873.46 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
75. eif5a ENSDARG00000017235 245.64 1841.45 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
76. rpl35 ENSDARG00000018334 239.25 1793.55 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
77. rpsa ENSDARG00000019181 236.21 1770.76 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
78. pabpc1a ENSDARG00000017219 235.29 1763.86 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
79. hbbe1.1 ENSDARG00000113599 229.82 1722.86 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
80. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 229.51 1720.53 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
81. rpl6 ENSDARG00000058451 217.94 1633.80 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
82. rps6 ENSDARG00000019778 217.64 1631.55 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. rpl22 ENSDARG00000070437 215.81 1617.83 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
84. rps7 ENSDARG00000042566 215.51 1615.58 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
85. rpl28 ENSDARG00000005791 215.20 1613.26 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
86. rpl35a ENSDARG00000088030 214.90 1611.01 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
87. mt-nd1 ENSDARG00000063895 213.38 1599.61 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
88. rpl15 ENSDARG00000009285 210.94 1581.32 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
89. rps29 ENSDARG00000041232 204.86 1535.74 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
90. rplp2l ENSDARG00000011201 202.42 1517.45 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
91. icn ENSDARG00000009978 201.20 1508.30 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
92. rpl24 ENSDARG00000099104 199.99 1499.23 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
93. rpl38 ENSDARG00000006413 197.25 1478.69 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
94. rpl30 ENSDARG00000035871, ENSDARG00000109253 192.38 1442.19 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
95. pcna ENSDARG00000054155 190.24 1426.14 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
96. rpl14 ENSDARG00000103433 189.94 1423.89 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
97. apoa1b ENSDARG00000101324 188.72 1414.75 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 188.72 1414.75 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. rpl39 ENSDARG00000036316, ENSDARG00000117167 188.72 1414.75 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
100. RPL29 ENSDARG00000077717 188.42 1412.50 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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