Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s11.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17688.78 132587.04
2. mt-co2 ENSDARG00000063908 1510.68 11323.37 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. tmsb4x ENSDARG00000077777 1429.12 10712.03 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 1386.49 10392.50
5. ptmab ENSDARG00000101766 1384.14 10374.88 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
6. si:dkey-151g10.6 si:dkey-151g10.6 1164.98 8732.16
7. ppiaa ENSDARG00000009212 982.39 7363.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. eef1a1l1 ENSDARG00000020850 896.14 6717.06 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. krt4 ENSDARG00000017624, ENSDARG00000115790 880.36 6598.78 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
10. hmgn2 ENSDARG00000099572 864.25 6478.02 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
11. hmga1a ENSDARG00000028335 779.34 5841.58 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
12. actb2 ENSDARG00000037870 702.81 5267.94 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. rpl23 ENSDARG00000053457 635.69 4764.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
14. mt-co3 ENSDARG00000063912 593.06 4445.31 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 556.81 4173.59 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. mt-nd4 ENSDARG00000063917 522.58 3917.02 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 509.15 3816.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. h3f3a 499.42 3743.42 H3 histone, family 3A, transcript variant X1
19. AL954137.2 ENSDARG00000114408 491.03 3680.54
20. hsp90ab1 ENSDARG00000029150 484.65 3632.72 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
21. mt-atp6 ENSDARG00000063911 450.42 3376.14 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. cirbp cirbp 419.87 3147.15
23. si:dkeyp-86f7.3 si:dkeyp-86f7.3 419.54 3144.68
24. rpl36a ENSDARG00000058105, ENSDARG00000112656 408.46 3061.63 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
25. mt-nd2 ENSDARG00000063899 404.77 3033.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
26. rps23 ENSDARG00000021838 402.09 3013.88 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
27. rps20 ENSDARG00000036044 398.73 2988.70 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
28. hnrnpab hnrnpab 389.67 2920.79
29. actb1 ENSDARG00000037746, ENSDARG00000113649 382.28 2865.40 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. id1 ENSDARG00000040764 372.89 2795.01 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
31. rpl9 ENSDARG00000037350, ENSDARG00000112384 370.20 2774.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
32. mt-cyb ENSDARG00000063924 368.19 2759.78 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. rps15 ENSDARG00000070849, ENSDARG00000110979 362.82 2719.53 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
34. khdrbs1a ENSDARG00000052856 362.48 2716.98 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
35. marcksb ENSDARG00000008803 344.69 2583.64 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 325.56 2440.25 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. mt-co1 ENSDARG00000063905 322.54 2417.61 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
38. cfl1 ENSDARG00000021124 322.21 2415.14 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
39. rpl11 ENSDARG00000043509 319.52 2394.98 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
40. pnrc2 ENSDARG00000053291, ENSDARG00000112537 319.19 2392.50 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
41. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 311.13 2332.09 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
42. ptmaa ENSDARG00000021113, ENSDARG00000110479 307.10 2301.88 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 301.06 2256.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. rpl8 ENSDARG00000014867 291.33 2183.68 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. rpl21 ENSDARG00000010516, ENSDARG00000110263 285.96 2143.43 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
46. rpl27 ENSDARG00000015128 285.62 2140.88 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
47. fkbp1aa ENSDARG00000022684 283.27 2123.26 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
48. rps24 ENSDARG00000039347 279.58 2095.60 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
49. rps5 ENSDARG00000043453 274.21 2055.35 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
50. mt-nd1 ENSDARG00000063895 271.86 2037.74 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
51. rps27.1 ENSDARG00000023298 270.85 2030.17 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
52. rplp1 ENSDARG00000021864 270.52 2027.69 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 269.85 2022.67 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
54. h3f3d ENSDARG00000045248 266.49 1997.49 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
55. pcna ENSDARG00000054155 264.14 1979.87 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
56. rps12 ENSDARG00000036875, ENSDARG00000115157 262.80 1969.83 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
57. fabp3 ENSDARG00000023290 261.46 1959.79 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
58. rps15a ENSDARG00000010160 259.44 1944.64 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
59. rpl36 ENSDARG00000100588 256.09 1919.53 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
60. faua ENSDARG00000099022 252.39 1891.80 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
61. si:ch1073-429i10.3 252.06 1889.33 si:ch1073-429i10.3, transcript variant X2
62. rps27a ENSDARG00000032725, ENSDARG00000114059 247.70 1856.65 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. h2afvb ENSDARG00000116491 247.36 1854.10 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
64. eef1g ENSDARG00000056119 243.33 1823.89 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
65. rplp2 ENSDARG00000101406 241.99 1813.85 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
66. rpl7 ENSDARG00000007320 238.97 1791.21 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
67. eif5a ENSDARG00000017235 237.63 1781.17 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
68. nucks1a ENSDARG00000078473 232.26 1740.92 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
69. rpl18a ENSDARG00000025073 231.25 1733.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. rps9 ENSDARG00000011405, ENSDARG00000113248 228.23 1710.71 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. rpl26 ENSDARG00000102317 225.88 1693.09 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
72. rpl18 ENSDARG00000029533 225.21 1688.07 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. rps14 ENSDARG00000036629 225.21 1688.07 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
74. rps26l ENSDARG00000030408 221.52 1660.41 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
75. marcksl1b ENSDARG00000035715 220.85 1655.39 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
76. rps29 ENSDARG00000041232 219.84 1647.82 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
77. rpl19 ENSDARG00000013307 218.16 1635.23 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
78. rps19 ENSDARG00000030602 217.15 1627.66 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
79. hnrnpa0a ENSDARG00000089302 215.48 1615.14 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
80. TUBA1A ENSDARG00000001889 210.44 1577.36 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
81. rps2 ENSDARG00000077291 209.77 1572.34 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 209.10 1567.32 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rpl39 ENSDARG00000036316, ENSDARG00000117167 203.73 1527.07 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
84. zgc:123194 zgc:123194 199.70 1496.86
85. rpl15 ENSDARG00000009285 198.69 1489.29 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
86. rps7 ENSDARG00000042566 193.66 1451.59 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
87. rps6 ENSDARG00000019778 191.65 1436.52 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
88. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 189.30 1418.91 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
89. rpl30 ENSDARG00000035871, ENSDARG00000109253 187.62 1406.31 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
90. ywhabl ENSDARG00000040287 182.92 1371.08 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
91. rpl38 ENSDARG00000006413 182.58 1368.54 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
92. RPL29 ENSDARG00000077717 181.24 1358.49 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. ccnd1 ENSDARG00000101637 179.56 1345.90 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
94. marcksl1a ENSDARG00000039034 179.23 1343.43 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
95. rps4x ENSDARG00000014690 172.85 1295.60 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
96. rpl35 ENSDARG00000018334 172.51 1293.06 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
97. rpl22 ENSDARG00000070437 170.17 1275.52 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
98. rpl24 ENSDARG00000099104 169.49 1270.42 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
99. rpl35a ENSDARG00000088030 168.15 1260.38 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
100. rpl14 ENSDARG00000103433 166.14 1245.31 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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