Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo1, section s10.

Sample reads: 133,412. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17001.96 127439.63
2. ptmab ENSDARG00000101766 1440.50 10797.39 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
3. zgc:112425 zgc:112425 1348.97 10111.32
4. hmga1a ENSDARG00000028335 1220.59 9149.04 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. eef1a1l1 ENSDARG00000020850 1124.75 8430.66 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
6. mt-co2 ENSDARG00000063908 1081.67 8107.75 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. ppiaa ENSDARG00000009212 1021.58 7657.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. hmgn2 ENSDARG00000099572 931.12 6979.29 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
9. si:dkey-151g10.6 si:dkey-151g10.6 925.30 6935.66
10. actb2 ENSDARG00000037870 739.42 5542.39 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. tmsb4x ENSDARG00000077777 725.64 5439.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. rpl23 ENSDARG00000053457 679.54 5093.55 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
13. AL954137.2 ENSDARG00000114408 622.47 4665.78
14. krt4 ENSDARG00000017624, ENSDARG00000115790 604.37 4530.11 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
15. rpl10a ENSDARG00000042905, ENSDARG00000115649 600.93 4504.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
16. hsp90ab1 ENSDARG00000029150 544.50 4081.35 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
17. hnrnpab hnrnpab 518.44 3886.01
18. mt-co3 ENSDARG00000063912 516.07 3868.25 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 477.73 3580.87 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. si:dkeyp-86f7.3 si:dkeyp-86f7.3 468.25 3509.81
21. cirbp cirbp 460.07 3448.49
22. h3f3a 452.96 3395.20 H3 histone, family 3A, transcript variant X1
23. hspa8 ENSDARG00000068992, ENSDARG00000114726 451.67 3385.53 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
24. rplp1 ENSDARG00000021864 443.05 3320.92 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 431.20 3232.10 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. mt-nd4 ENSDARG00000063917 415.91 3117.49 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
27. rpl9 ENSDARG00000037350, ENSDARG00000112384 406.86 3049.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
28. mt-atp6 ENSDARG00000063911 386.83 2899.52 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. cfl1 ENSDARG00000021124 364.00 2728.39 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
30. khdrbs1a ENSDARG00000052856 364.00 2728.39 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
31. marcksb ENSDARG00000008803 364.00 2728.39 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
32. rpl36a ENSDARG00000058105, ENSDARG00000112656 363.79 2726.82 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
33. mt-nd2 ENSDARG00000063899 347.20 2602.47 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
34. rpl21 ENSDARG00000010516, ENSDARG00000110263 339.02 2541.15 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
35. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 337.08 2526.61 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
36. zgc:123194 zgc:123194 329.97 2473.32
37. rps23 ENSDARG00000021838 326.10 2444.31 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. TUBA1A ENSDARG00000001889 320.71 2403.91 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 319.85 2397.46 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. fkbp1aa ENSDARG00000022684 316.40 2371.60 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
41. rps27.1 ENSDARG00000023298 311.02 2331.28 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
42. rps20 ENSDARG00000036044 308.86 2315.09 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
43. rpl8 ENSDARG00000014867 307.36 2303.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. pcna ENSDARG00000054155 304.34 2281.21 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
45. rpl27 ENSDARG00000015128 296.80 2224.69 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
46. rps9 ENSDARG00000011405, ENSDARG00000113248 296.59 2223.12 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
47. eif5a ENSDARG00000017235 296.16 2219.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
48. rps15 ENSDARG00000070849, ENSDARG00000110979 295.73 2216.67 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
49. rpl11 ENSDARG00000043509 293.79 2202.13 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
50. si:ch1073-429i10.3 293.36 2198.90 si:ch1073-429i10.3, transcript variant X2
51. marcksl1b ENSDARG00000035715 290.99 2181.14 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
52. mt-cyb ENSDARG00000063924 290.34 2176.27 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
53. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 289.05 2166.60 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
54. id1 ENSDARG00000040764 287.33 2153.71 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
55. rpl18a ENSDARG00000025073 285.17 2137.52 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. pnrc2 ENSDARG00000053291, ENSDARG00000112537 284.31 2131.07 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
57. rps2 ENSDARG00000077291 284.31 2131.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
58. rpl26 ENSDARG00000102317 282.16 2114.95 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. h3f3d ENSDARG00000045248 280.86 2105.21 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
60. rps12 ENSDARG00000036875, ENSDARG00000115157 279.36 2093.97 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
61. rps5 ENSDARG00000043453 273.33 2048.77 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 271.17 2032.58 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. rpl18 ENSDARG00000029533 269.88 2022.91 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
64. h2afvb ENSDARG00000116491 267.94 2008.37 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
65. faua ENSDARG00000099022 267.73 2006.79 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
66. rpl19 ENSDARG00000013307 262.56 1968.04 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. hnrnpa0a ENSDARG00000089302 259.76 1947.05 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
68. rps19 ENSDARG00000030602 258.03 1934.09 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
69. rps26l ENSDARG00000030408 251.79 1887.31 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
70. rpsa ENSDARG00000019181 247.05 1851.78 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
71. rpl35 ENSDARG00000018334 242.96 1821.13 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
72. eef1g ENSDARG00000056119 242.31 1816.26 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
73. rps15a ENSDARG00000010160 241.45 1809.81 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
74. ptmaa ENSDARG00000021113, ENSDARG00000110479 240.80 1804.94 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
75. rpl36 ENSDARG00000100588 240.37 1801.71 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
76. rpl5b ENSDARG00000015862, ENSDARG00000109661 236.49 1772.63 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
77. tubb4b ENSDARG00000002344 234.77 1759.74 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
78. fabp3 ENSDARG00000023290 228.52 1712.89 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
79. rpl7 ENSDARG00000007320 222.28 1666.12 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. rps6 ENSDARG00000019778 220.77 1654.80 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
81. rplp2 ENSDARG00000101406 220.12 1649.93 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
82. rplp2l ENSDARG00000011201 219.05 1641.91 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
83. fabp7a ENSDARG00000007697 215.60 1616.05 fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
84. rpl15 ENSDARG00000009285 214.96 1611.25 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
85. ran ENSDARG00000057026 214.74 1609.60 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
86. rps14 ENSDARG00000036629 205.48 1540.19 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
87. rps24 ENSDARG00000039347 204.83 1535.32 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
88. marcksl1a ENSDARG00000039034 200.09 1499.79 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
89. rps4x ENSDARG00000014690 196.22 1470.78 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
90. rpl24 ENSDARG00000099104 196.00 1469.13 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
91. tuba8l4 ENSDARG00000006260 195.79 1467.56 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
92. rplp0 ENSDARG00000051783 194.06 1454.59 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
93. mt-nd1 ENSDARG00000063895 193.85 1453.02 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
94. rpl6 ENSDARG00000058451 192.77 1444.92 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
95. nucks1a ENSDARG00000078473 191.26 1433.61 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
96. gnb2l1 189.97 1423.94 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
97. ATP5B 188.46 1412.62 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
98. mt-co1 ENSDARG00000063905 178.99 1341.63 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
99. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 175.76 1317.42 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
100. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 174.46 1307.68 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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