Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s6.

Sample reads: 133,429. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10975.51 82257.51
2. tpma ENSDARG00000033683 4955.16 37137.15 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3710.99 27812.54 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3428.70 25696.88 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 2548.00 19096.35 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. atp2a1 ENSDARG00000020574 2375.79 17805.69 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. mylz3 ENSDARG00000017441 2332.13 17478.48 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mt-nd2 ENSDARG00000063899 2228.81 16704.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2153.16 16137.16 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mt-atp6 ENSDARG00000063911 2075.05 15551.76 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1934.83 14500.86 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. mt-co2 ENSDARG00000063908 1931.75 14477.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. actc1b ENSDARG00000099197 1718.96 12882.99 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1549.22 11610.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mt-nd4 ENSDARG00000063917 1536.30 11514.02 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. mt-co3 ENSDARG00000063912 1501.86 11255.90 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. acta1b ENSDARG00000055618 1498.79 11232.89 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. mt-cyb ENSDARG00000063924 1203.58 9020.40 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
19. mt-nd1 ENSDARG00000063895 1102.72 8264.49 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. myhz1.3 ENSDARG00000067997 1091.03 8176.88 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. pvalb1 ENSDARG00000037789 1043.68 7822.01 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. tnni2a.4 ENSDARG00000029069 911.45 6830.99 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. eef1a1l1 ENSDARG00000020850 885.62 6637.40 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. acta1a ENSDARG00000036371 830.88 6227.15 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. tnnt3a ENSDARG00000030270 827.81 6204.14 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. myl1 ENSDARG00000014196 802.59 6015.12 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
27. zgc:66286 zgc:66286 718.95 5388.27
28. tnnt3b ENSDARG00000068457 699.88 5245.35 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. mylpfb ENSDARG00000002589 677.74 5079.42 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
30. aldoab ENSDARG00000034470 619.93 4646.15 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
31. si:ch211-226o13.2 584.26 4378.82 si:ch211-226o13.2
32. mt-co1 ENSDARG00000063905 578.11 4332.73 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
33. si:dkey-151g10.6 si:dkey-151g10.6 554.74 4157.58
34. myl10 ENSDARG00000062592 549.21 4116.13 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
35. col2a1a ENSDARG00000069093, ENSDARG00000111202 543.67 4074.61 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
36. actb2 ENSDARG00000037870 528.91 3963.99 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
37. col9a1 col9a1 506.77 3798.06
38. tpm3 ENSDARG00000005162 500.01 3747.40 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 495.09 3710.52 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. myhz2 ENSDARG00000012944 494.47 3705.88 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
41. tmsb4x ENSDARG00000077777 454.49 3406.24 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
42. gapdh ENSDARG00000043457 418.82 3138.91 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
43. ppiaa ENSDARG00000009212 400.37 3000.63 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
44. rpl23 ENSDARG00000053457 374.54 2807.04 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. pvalb4 ENSDARG00000024433 367.16 2751.73 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
46. btf3 ENSDARG00000035400, ENSDARG00000116462 362.24 2714.86 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. nme2b.2 ENSDARG00000099420 360.40 2701.07 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
48. rpl8 ENSDARG00000014867 336.41 2521.27 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. mt-nd3 ENSDARG00000063914 327.80 2456.74 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
50. col1a1b ENSDARG00000035809 325.34 2438.31 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
51. pkmb ENSDARG00000099860 320.42 2401.43 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
52. actb1 ENSDARG00000037746, ENSDARG00000113649 316.12 2369.21 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
53. col1a1a ENSDARG00000012405, ENSDARG00000116113 311.81 2336.90 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
54. hspa8 ENSDARG00000068992, ENSDARG00000114726 305.66 2290.81 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
55. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 303.20 2272.38 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
56. col9a2 ENSDARG00000024492 298.28 2235.50 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
57. ttna ttna 298.28 2235.50
58. col11a1a ENSDARG00000026165, ENSDARG00000115341 297.05 2226.28 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 291.52 2184.84 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. rpl26 ENSDARG00000102317 290.90 2180.19 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
61. rpl18a ENSDARG00000025073 289.06 2166.40 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 287.83 2157.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. eif5a ENSDARG00000017235 287.21 2152.54 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
64. rps23 ENSDARG00000021838 279.83 2097.23 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
65. ATP5B 275.53 2065.00 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 268.76 2014.26 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. rps26l ENSDARG00000030408 268.15 2009.69 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. tmem38a ENSDARG00000024047 267.53 2005.04 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
69. rps14 ENSDARG00000036629 264.46 1982.03 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
70. rpl27 ENSDARG00000015128 260.15 1949.73 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rps2 ENSDARG00000077291 255.23 1912.86 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. eef2b ENSDARG00000100371, ENSDARG00000109247 252.77 1894.42 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
73. ak1 ENSDARG00000001950 238.62 1788.37 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
74. rpl11 ENSDARG00000043509 234.32 1756.14 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
75. rplp1 ENSDARG00000021864 226.32 1696.19 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. rpl19 ENSDARG00000013307 224.48 1682.40 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. rpl9 ENSDARG00000037350, ENSDARG00000112384 224.48 1682.40 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
78. atp5g1 223.86 1677.75 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
79. rpl7 ENSDARG00000007320 221.40 1659.31 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. rps9 ENSDARG00000011405, ENSDARG00000113248 218.33 1636.31 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
81. hmga1a ENSDARG00000028335 215.25 1613.22 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
82. tnni2b.1 ENSDARG00000035958 214.64 1608.65 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
83. fabp3 ENSDARG00000023290 212.79 1594.78 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
84. rplp2 ENSDARG00000101406 210.95 1580.99 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
85. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 209.10 1567.13 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
86. ldb3b ENSDARG00000099974 207.87 1557.91 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
87. tpm2 ENSDARG00000104682 206.03 1544.12 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
88. rps24 ENSDARG00000039347 204.18 1530.26 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
89. atp5g3b 203.57 1525.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
90. smyhc1 ENSDARG00000099959, ENSDARG00000115916 202.34 1516.47 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
91. rps20 ENSDARG00000036044 201.11 1507.25 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
92. rpl18 ENSDARG00000029533 198.03 1484.16 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. rps5 ENSDARG00000043453 191.27 1433.50 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
94. RPL29 ENSDARG00000077717 188.81 1415.06 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
95. rps27.1 ENSDARG00000023298 187.58 1405.84 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. COX5B_1 ENSDARG00000015978 183.89 1378.19 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
97. actn3a ENSDARG00000013755, ENSDARG00000111128 183.89 1378.19 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
98. rpl5b ENSDARG00000015862, ENSDARG00000109661 183.89 1378.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
99. rpl35 ENSDARG00000018334 182.66 1368.97 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
100. fkbp1aa ENSDARG00000022684 182.04 1364.32 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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