Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s5.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14657.31 109879.80
2. tpma ENSDARG00000033683 5359.55 40178.33 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3937.24 29515.86 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2644.00 19820.98 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 2512.02 18831.58 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. atp2a1 ENSDARG00000020574 2170.22 16269.24 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
7. mt-atp6 ENSDARG00000063911 2021.31 15152.93 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1910.60 14322.98 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
9. mt-nd2 ENSDARG00000063899 1904.80 14279.50 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mylz3 ENSDARG00000017441 1891.27 14178.07 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1857.91 13927.98 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. mt-nd4 ENSDARG00000063917 1648.57 12358.65 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mt-co2 ENSDARG00000063908 1626.33 12191.92 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. acta1b ENSDARG00000055618 1490.97 11177.19 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. actc1b ENSDARG00000099197 1483.72 11122.84 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1446.97 10847.34 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. mt-co3 ENSDARG00000063912 1444.07 10825.60 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. myhz1.3 ENSDARG00000067997 1434.40 10753.10 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mt-nd1 ENSDARG00000063895 1096.95 8223.38 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. pvalb1 ENSDARG00000037789 1022.02 7661.66 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. mt-cyb ENSDARG00000063924 982.86 7368.10 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. tnnt3a ENSDARG00000030270 948.53 7110.74 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
23. tnni2a.4 ENSDARG00000029069 927.26 6951.29 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
24. acta1a ENSDARG00000036371 865.86 6491.00 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. eef1a1l1 ENSDARG00000020850 816.55 6121.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
26. myl1 ENSDARG00000014196 742.58 5566.82 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
27. tnnt3b ENSDARG00000068457 718.41 5385.62 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
28. zgc:66286 zgc:66286 643.96 4827.50
29. mylpfb ENSDARG00000002589 632.36 4740.54 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
30. si:ch211-226o13.2 618.34 4635.44 si:ch211-226o13.2
31. myhz2 ENSDARG00000012944 564.67 4233.10 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
32. mt-co1 ENSDARG00000063905 548.72 4113.53 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
33. tmsb4x ENSDARG00000077777 545.33 4088.11 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
34. aldoab ENSDARG00000034470 543.88 4077.24 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
35. si:dkey-151g10.6 si:dkey-151g10.6 489.25 3667.71
36. myl10 ENSDARG00000062592 488.77 3664.11 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. actb2 ENSDARG00000037870 475.23 3562.60 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
38. col9a1 col9a1 472.82 3544.54
39. gapdh ENSDARG00000043457 464.11 3479.24 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
40. col2a1a ENSDARG00000069093, ENSDARG00000111202 460.73 3453.90 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
41. tpm3 ENSDARG00000005162 455.41 3414.02 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 418.67 3138.60 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. ttna ttna 394.98 2961.00
44. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 376.13 2819.69 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
45. nme2b.2 ENSDARG00000099420 373.23 2797.95 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
46. rpl23 ENSDARG00000053457 358.24 2685.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
47. actb1 ENSDARG00000037746, ENSDARG00000113649 347.60 2605.81 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
48. ppiaa ENSDARG00000009212 343.73 2576.80 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
49. ttnb ttnb 340.83 2555.06
50. pvalb4 ENSDARG00000024433 338.90 2540.59 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
51. rpl8 ENSDARG00000014867 337.45 2529.72 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. rpl21 ENSDARG00000010516, ENSDARG00000110263 321.98 2413.75 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
53. btf3 ENSDARG00000035400, ENSDARG00000116462 315.69 2366.60 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. col11a1a ENSDARG00000026165, ENSDARG00000115341 312.31 2341.26 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
55. rpl26 ENSDARG00000102317 298.29 2236.16 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 295.39 2214.42 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. col1a1b ENSDARG00000035809 283.79 2127.46 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
58. hspa8 ENSDARG00000068992, ENSDARG00000114726 270.73 2029.55 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 269.28 2018.68 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. col1a1a ENSDARG00000012405, ENSDARG00000116113 266.87 2000.61 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
61. pkmb ENSDARG00000099860 266.87 2000.61 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
62. ATP5B 265.90 1993.34 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
63. rpl18a ENSDARG00000025073 261.55 1960.73 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
64. rpl9 ENSDARG00000037350, ENSDARG00000112384 255.26 1913.58 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
65. rpl11 ENSDARG00000043509 250.91 1880.97 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rps23 ENSDARG00000021838 248.98 1866.50 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
67. eif5a ENSDARG00000017235 247.53 1855.63 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
68. rps2 ENSDARG00000077291 247.53 1855.63 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
69. ak1 ENSDARG00000001950 245.11 1837.49 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
70. smyhc1 ENSDARG00000099959, ENSDARG00000115916 243.18 1823.02 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
71. rpl27 ENSDARG00000015128 237.38 1779.54 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
72. fabp3 ENSDARG00000023290 236.89 1775.87 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. mt-nd3 ENSDARG00000063914 233.02 1746.85 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
74. col9a2 ENSDARG00000024492 231.57 1735.98 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
75. rplp1 ENSDARG00000021864 231.09 1732.39 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
76. ldb3b ENSDARG00000099974 229.64 1721.52 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
77. eef2b ENSDARG00000100371, ENSDARG00000109247 229.16 1717.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
78. tmem38a ENSDARG00000024047 224.32 1681.63 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
79. hmga1a ENSDARG00000028335 222.39 1667.17 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
80. rps9 ENSDARG00000011405, ENSDARG00000113248 220.45 1652.62 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
81. rps26l ENSDARG00000030408 211.75 1587.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
82. rpl19 ENSDARG00000013307 204.50 1533.05 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
83. rps12 ENSDARG00000036875, ENSDARG00000115157 204.50 1533.05 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
84. rps14 ENSDARG00000036629 204.50 1533.05 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
85. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 200.63 1504.04 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
86. rps20 ENSDARG00000036044 199.67 1496.84 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
87. tnni2b.1 ENSDARG00000035958 199.67 1496.84 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
88. rpl7 ENSDARG00000007320 193.38 1449.69 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
89. rpl36 ENSDARG00000100588 185.65 1391.74 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
90. zgc:112425 zgc:112425 183.23 1373.60
91. rps5 ENSDARG00000043453 182.26 1366.33 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
92. atp5g3b 181.29 1359.06 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 181.29 1359.06 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rps15 ENSDARG00000070849, ENSDARG00000110979 178.39 1337.32 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
95. rplp2 ENSDARG00000101406 177.91 1333.72 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
96. rpsa ENSDARG00000019181 174.04 1304.71 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. tpm2 ENSDARG00000104682 170.66 1279.37 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
98. rplp2l ENSDARG00000011201 169.69 1272.10 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. rps27.1 ENSDARG00000023298 169.69 1272.10 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
100. atp5g1 168.72 1264.82 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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