Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s4.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17428.36 130644.54
2. tpma ENSDARG00000033683 4699.70 35229.37 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 3541.89 26550.32 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 3257.83 24420.98 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. atp2a1 ENSDARG00000020574 2663.92 19968.98 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
6. krt4 ENSDARG00000017624, ENSDARG00000115790 2232.76 16736.97 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
7. actc1b ENSDARG00000099197 2231.07 16724.30 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mylz3 ENSDARG00000017441 2112.71 15837.06 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2016.33 15114.59 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1848.51 13856.60 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. mt-atp6 ENSDARG00000063911 1758.90 13184.87 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-nd2 ENSDARG00000063899 1577.13 11822.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co2 ENSDARG00000063908 1485.40 11134.69 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. acta1b ENSDARG00000055618 1432.57 10738.67 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1372.12 10285.53 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. mt-nd4 ENSDARG00000063917 1327.31 9949.63 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. mt-co3 ENSDARG00000063912 1245.31 9334.95 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. myhz1.3 ENSDARG00000067997 1047.05 7848.78 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
19. mt-nd1 ENSDARG00000063895 1000.98 7503.44 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. eef1a1l1 ENSDARG00000020850 886.42 6644.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. pvalb1 ENSDARG00000037789 875.86 6565.52 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. mt-cyb ENSDARG00000063924 844.15 6327.82 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. mylpfb ENSDARG00000002589 776.10 5817.71 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
24. myl1 ENSDARG00000014196 772.29 5789.15 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
25. tnnt3a ENSDARG00000030270 722.41 5415.25 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
26. acta1a ENSDARG00000036371 692.82 5193.44 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. tnni2a.4 ENSDARG00000029069 682.25 5114.21 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
28. tnnt3b ENSDARG00000068457 620.12 4648.47 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. si:ch211-226o13.2 591.79 4436.11 si:ch211-226o13.2
30. zgc:66286 zgc:66286 554.17 4154.11
31. actb2 ENSDARG00000037870 553.75 4150.96 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
32. myhz2 ENSDARG00000012944 505.98 3792.87 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
33. aldoab ENSDARG00000034470 491.19 3682.00 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
34. mt-co1 ENSDARG00000063905 485.69 3640.78 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
35. si:dkey-151g10.6 si:dkey-151g10.6 465.40 3488.68
36. col2a1a ENSDARG00000069093, ENSDARG00000111202 431.59 3235.24 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
37. ppiaa ENSDARG00000009212 425.25 3187.71 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
38. gapdh ENSDARG00000043457 420.60 3152.85 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 418.48 3136.96 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. tmsb4x ENSDARG00000077777 417.64 3130.67 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
41. myl10 ENSDARG00000062592 415.52 3114.77 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. col9a1 col9a1 404.96 3035.62
43. ttna ttna 403.27 3022.95
44. tpm3 ENSDARG00000005162 399.46 2994.39 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
45. nme2b.2 ENSDARG00000099420 390.16 2924.67 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
46. col1a1b ENSDARG00000035809 347.47 2604.67 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
47. col1a1a ENSDARG00000012405, ENSDARG00000116113 344.51 2582.48 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
48. rpl23 ENSDARG00000053457 330.98 2481.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. pvalb4 ENSDARG00000024433 328.45 2462.09 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
50. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 309.00 2316.29 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
51. actb1 ENSDARG00000037746, ENSDARG00000113649 308.58 2313.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
52. ATP5B 307.31 2303.62 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
53. btf3 ENSDARG00000035400, ENSDARG00000116462 300.12 2249.73 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. rpl8 ENSDARG00000014867 300.12 2249.73 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 291.67 2186.38 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. col11a1a ENSDARG00000026165, ENSDARG00000115341 281.95 2113.52 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
57. rpl26 ENSDARG00000102317 281.95 2113.52 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
58. eif5a ENSDARG00000017235 268.42 2012.10 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
59. ttnb ttnb 262.08 1964.57
60. pkmb ENSDARG00000099860 255.74 1917.05 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
61. rpl18a ENSDARG00000025073 254.47 1907.53 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
62. eef2b ENSDARG00000100371, ENSDARG00000109247 253.20 1898.01 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
63. rplp1 ENSDARG00000021864 252.78 1894.86 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
64. rpl11 ENSDARG00000043509 249.40 1869.52 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
65. col9a2 ENSDARG00000024492 246.86 1850.48 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
66. hspa8 ENSDARG00000068992, ENSDARG00000114726 245.17 1837.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
67. hmga1a ENSDARG00000028335 241.37 1809.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
68. rps23 ENSDARG00000021838 237.99 1783.99 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
69. rpl36a ENSDARG00000058105, ENSDARG00000112656 234.60 1758.58 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
70. fabp3 ENSDARG00000023290 232.07 1739.62 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
71. ak1 ENSDARG00000001950 231.65 1736.47 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 229.95 1723.73 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. smyhc1 ENSDARG00000099959, ENSDARG00000115916 229.53 1720.58 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
74. rps27a ENSDARG00000032725, ENSDARG00000114059 228.69 1714.28 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
75. rps2 ENSDARG00000077291 224.04 1679.42 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. zgc:112425 zgc:112425 222.35 1666.76
77. rpl27 ENSDARG00000015128 220.65 1654.01 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. rps14 ENSDARG00000036629 212.62 1593.82 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
79. rps20 ENSDARG00000036044 210.51 1578.00 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
80. rpl7 ENSDARG00000007320 207.97 1558.96 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
81. rpl19 ENSDARG00000013307 203.75 1527.33 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
82. tmem38a ENSDARG00000024047 201.63 1511.44 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
83. mt-nd3 ENSDARG00000063914 195.29 1463.91 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
84. rps9 ENSDARG00000011405, ENSDARG00000113248 189.37 1419.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
85. ptmab ENSDARG00000101766 187.26 1403.72 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
86. rplp0 ENSDARG00000051783 186.84 1400.57 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. ldb3b ENSDARG00000099974 184.30 1381.53 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
88. atp5a1 177.96 1334.00 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
89. atp5g3b 174.58 1308.67 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
90. rps15 ENSDARG00000070849, ENSDARG00000110979 173.73 1302.30 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
91. rps26l ENSDARG00000030408 172.47 1292.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 172.04 1289.63 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. RPL29 ENSDARG00000077717 169.51 1270.66 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
94. rps27.1 ENSDARG00000023298 165.28 1238.95 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
95. rpl15 ENSDARG00000009285 162.74 1219.91 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
96. rpl36 ENSDARG00000100588 161.05 1207.25 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
97. tpm2 ENSDARG00000104682 159.78 1197.73 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 159.36 1194.58 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 158.94 1191.43 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
100. rplp2l ENSDARG00000011201 158.09 1185.06 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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