Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s28.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6168.90 46242.88
2. mt-co2 ENSDARG00000063908 3084.45 23121.44 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. mylz3 ENSDARG00000017441 3084.45 23121.44 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
4. apoc1l apoc1l 2313.34 17341.10
5. ckma ENSDARG00000035327, ENSDARG00000114671 2313.34 17341.10 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mt-atp6 ENSDARG00000063911 2313.34 17341.10 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-nd4 ENSDARG00000063917 2313.34 17341.10 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2313.34 17341.10 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2313.34 17341.10 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. si:dkey-151g10.6 si:dkey-151g10.6 2313.34 17341.10
11. slc43a2b ENSDARG00000061120, ENSDARG00000117188 2313.34 17341.10 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
12. tpma ENSDARG00000033683 2313.34 17341.10 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
13. actc1b ENSDARG00000099197 1542.22 11560.68 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. ccng1 ENSDARG00000076667, ENSDARG00000110260 1542.22 11560.68 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
15. eef1a1l1 ENSDARG00000020850 1542.22 11560.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. ldb3b ENSDARG00000099974 1542.22 11560.68 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
17. myhz1.3 ENSDARG00000067997 1542.22 11560.68 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
18. rps12 ENSDARG00000036875, ENSDARG00000115157 1542.22 11560.68 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1542.22 11560.68 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. AL772300.3 AL772300.3 771.11 5780.34
21. BX511252.1 BX511252.1 771.11 5780.34
22. BX548078.1 ENSDARG00000093780 771.11 5780.34
23. CT955967.1 ENSDARG00000099956 771.11 5780.34
24. CU463857.1 CU463857.1 771.11 5780.34
25. EIF4G1_1 EIF4G1_1 771.11 5780.34
26. ENSDARG00000070355 ENSDARG00000070355 771.11 5780.34
27. FP102272.1 FP102272.1 771.11 5780.34
28. IDH2 ENSDARG00000003795 771.11 5780.34 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
29. MRPS28 ENSDARG00000041538, ENSDARG00000114420 771.11 5780.34 mitochondrial ribosomal protein S28 [Source:ZFIN;Acc:ZDB-GENE-061110-52]
30. PCDH9 ENSDARG00000063264 771.11 5780.34 protocadherin 9 [Source:ZFIN;Acc:ZDB-GENE-091015-1]
31. ROMO1 ENSDARG00000038076 771.11 5780.34 reactive oxygen species modulator 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1768]
32. RPS17L RPS17L 771.11 5780.34
33. TUBGCP6 771.11 5780.34 tubulin, gamma complex associated protein 6
34. acta1b ENSDARG00000055618 771.11 5780.34 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 771.11 5780.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. actb2 ENSDARG00000037870 771.11 5780.34 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
37. actn3a ENSDARG00000013755, ENSDARG00000111128 771.11 5780.34 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
38. ahcy ENSDARG00000005191 771.11 5780.34 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
39. apoa1a ENSDARG00000012076, ENSDARG00000110395 771.11 5780.34 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
40. apoa1b ENSDARG00000101324 771.11 5780.34 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
41. apoa2 ENSDARG00000015866 771.11 5780.34 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
42. apobb apobb 771.11 5780.34
43. apoea ENSDARG00000102004 771.11 5780.34 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
44. aspg ENSDARG00000052942 771.11 5780.34 asparaginase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-070820-14]
45. atp2a1 ENSDARG00000020574 771.11 5780.34 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
46. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 771.11 5780.34 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
47. bin2a ENSDARG00000003219 771.11 5780.34 bridging integrator 2a [Source:ZFIN;Acc:ZDB-GENE-041114-126]
48. btf3 ENSDARG00000035400, ENSDARG00000116462 771.11 5780.34 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. casq1a ENSDARG00000038716, ENSDARG00000116662 771.11 5780.34 calsequestrin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-139]
50. cep97 ENSDARG00000102407 771.11 5780.34 centrosomal protein 97 [Source:ZFIN;Acc:ZDB-GENE-031030-11]
51. chd2 ENSDARG00000060687 771.11 5780.34 chromodomain helicase DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050419-256]
52. cisd1 ENSDARG00000079516, ENSDARG00000114546 771.11 5780.34 CDGSH iron sulfur domain 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1162]
53. cmip ENSDARG00000062933 771.11 5780.34 c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
54. cmpk ENSDARG00000019924 771.11 5780.34 cytidylate kinase [Source:ZFIN;Acc:ZDB-GENE-040426-2113]
55. col1a1b ENSDARG00000035809 771.11 5780.34 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
56. col9a2 ENSDARG00000024492 771.11 5780.34 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
57. cth ENSDARG00000074301 771.11 5780.34 cystathionase (cystathionine gamma-lyase) [Source:ZFIN;Acc:ZDB-GENE-030131-774]
58. cx43.4 ENSDARG00000007099 771.11 5780.34 connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
59. dusp4 ENSDARG00000044688, ENSDARG00000112584, ENSDARG00000116379 771.11 5780.34 dual specificity phosphatase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-709]
60. efcab7 ENSDARG00000020279 771.11 5780.34 EF-hand calcium binding domain 7 [Source:ZFIN;Acc:ZDB-GENE-040625-115]
61. eif3c ENSDARG00000016443 771.11 5780.34 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
62. fabp1b.1 ENSDARG00000059227 771.11 5780.34 fatty acid binding protein 1b, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050522-96]
63. fkbp9 ENSDARG00000005023 771.11 5780.34 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
64. gapdh ENSDARG00000043457 771.11 5780.34 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
65. gch2 ENSDARG00000099101 771.11 5780.34 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
66. hmgcl ENSDARG00000021220 771.11 5780.34 3-hydroxy-3-methylglutaryl-CoA lyase [Source:ZFIN;Acc:ZDB-GENE-040426-958]
67. hoxb8a ENSDARG00000056027 771.11 5780.34 homeobox B8a [Source:ZFIN;Acc:ZDB-GENE-990415-108]
68. hspa8 ENSDARG00000068992, ENSDARG00000114726 771.11 5780.34 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
69. ilf2 ENSDARG00000014591 771.11 5780.34 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
70. khdrbs1a ENSDARG00000052856 771.11 5780.34 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
71. lamc1 ENSDARG00000036279 771.11 5780.34 laminin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-021226-3]
72. ldha ENSDARG00000101251 771.11 5780.34 lactate dehydrogenase A4 [Source:ZFIN;Acc:ZDB-GENE-991026-5]
73. lgals3l lgals3l 771.11 5780.34
74. loxl1 ENSDARG00000054451 771.11 5780.34 lysyl oxidase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-693]
75. loxl2a ENSDARG00000044010 771.11 5780.34 lysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
76. lzts2a ENSDARG00000074597, ENSDARG00000113794 771.11 5780.34 leucine zipper, putative tumor suppressor 2a [Source:ZFIN;Acc:ZDB-GENE-090313-276]
77. mat2aa ENSDARG00000040334 771.11 5780.34 methionine adenosyltransferase II, alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-2049]
78. mt-cyb ENSDARG00000063924 771.11 5780.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
79. myl1 ENSDARG00000014196 771.11 5780.34 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
80. mylpfb ENSDARG00000002589 771.11 5780.34 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
81. ndufa7 ENSDARG00000036684 771.11 5780.34 NADH:ubiquinone oxidoreductase subunit A7 [Source:ZFIN;Acc:ZDB-GENE-040801-169]
82. nme2b.2 ENSDARG00000099420 771.11 5780.34 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
83. npc2 ENSDARG00000090912 771.11 5780.34 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
84. nqo1 ENSDARG00000010250 771.11 5780.34 NAD(P)H dehydrogenase, quinone 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1226]
85. nr2f1a ENSDARG00000052695 771.11 5780.34 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
86. oaz1a ENSDARG00000071403 771.11 5780.34 ornithine decarboxylase antizyme 1a [Source:ZFIN;Acc:ZDB-GENE-020731-4]
87. parp1 ENSDARG00000019529 771.11 5780.34 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
88. phf2 ENSDARG00000018691 771.11 5780.34 PHD finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-050302-10]
89. ppiaa ENSDARG00000009212 771.11 5780.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
90. psmd6 ENSDARG00000070674 771.11 5780.34 proteasome 26S subunit, non-ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1038]
91. ptmab ENSDARG00000101766 771.11 5780.34 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
92. pvalb9 ENSDARG00000071601, ENSDARG00000113946 771.11 5780.34 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
93. qkia ENSDARG00000097478 771.11 5780.34 QKI, KH domain containing, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-990415-230]
94. rab1ba ENSDARG00000058044 771.11 5780.34 zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873]
95. rab5aa ENSDARG00000018602 771.11 5780.34 RAB5A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-030131-139]
96. rbm39a ENSDARG00000011613 771.11 5780.34 RNA binding motif protein 39a [Source:ZFIN;Acc:ZDB-GENE-040426-2852]
97. rbx1 ENSDARG00000038030 771.11 5780.34 ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
98. rgma ENSDARG00000012248 771.11 5780.34 repulsive guidance molecule BMP co-receptor a [Source:ZFIN;Acc:ZDB-GENE-040527-1]
99. rnaseka ENSDARG00000069461 771.11 5780.34 ribonuclease, RNase K a [Source:ZFIN;Acc:ZDB-GENE-060825-301]
100. rpl10a ENSDARG00000042905, ENSDARG00000115649 771.11 5780.34 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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