Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s26.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8959.86 67164.18
2. BX511252.1 BX511252.1 3982.16 29850.75
3. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3982.16 29850.75 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
4. apoc1l apoc1l 2986.62 22388.06
5. cers2a ENSDARG00000013704 2986.62 22388.06 ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
6. tnnt3b ENSDARG00000068457 2986.62 22388.06 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
7. tpma ENSDARG00000033683 2986.62 22388.06 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. VMA21 ENSDARG00000093945, ENSDARG00000113532 1991.08 14925.37 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-081104-272]
9. acat2 ENSDARG00000007127 1991.08 14925.37 acetyl-CoA acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-990714-22]
10. actc1b ENSDARG00000099197 1991.08 14925.37 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. apoa1b ENSDARG00000101324 1991.08 14925.37 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
12. apoa2 ENSDARG00000015866 1991.08 14925.37 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
13. apobb apobb 1991.08 14925.37
14. ckmb ENSDARG00000040565 1991.08 14925.37 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
15. mt-atp6 ENSDARG00000063911 1991.08 14925.37 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-nd1 ENSDARG00000063895 1991.08 14925.37 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1991.08 14925.37 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. neb ENSDARG00000032630, ENSDARG00000109273 1991.08 14925.37 nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
19. pvalb1 ENSDARG00000037789 1991.08 14925.37 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
20. rpl26 ENSDARG00000102317 1991.08 14925.37 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
21. rpl9 ENSDARG00000037350, ENSDARG00000112384 1991.08 14925.37 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
22. ARID3C ENSDARG00000067729, ENSDARG00000114447 995.54 7462.69 AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
23. C7H16orf87 C7H16orf87 995.54 7462.69
24. CABZ01111496.1 ENSDARG00000003041 995.54 7462.69 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
25. COL2A1 COL2A1 995.54 7462.69
26. CR293507.1 ENSDARG00000112572 995.54 7462.69
27. RB1CC1 ENSDARG00000076559 995.54 7462.69 RB1-inducible coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-130206-1]
28. RPL37A RPL37A 995.54 7462.69
29. SAMD4A ENSDARG00000075759 995.54 7462.69 sterile alpha motif domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-070720-7]
30. XPR1 XPR1 995.54 7462.69
31. actb1 ENSDARG00000037746, ENSDARG00000113649 995.54 7462.69 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
32. actb2 ENSDARG00000037870 995.54 7462.69 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
33. actn3b ENSDARG00000001431 995.54 7462.69 actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
34. atp2a1 ENSDARG00000020574 995.54 7462.69 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
35. atp5g1 995.54 7462.69 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
36. atp5g3b 995.54 7462.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
37. casq2 ENSDARG00000008982 995.54 7462.69 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
38. cfl1l ENSDARG00000012972 995.54 7462.69 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
39. ckma ENSDARG00000035327, ENSDARG00000114671 995.54 7462.69 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
40. ckmt1 ENSDARG00000016598, ENSDARG00000113143 995.54 7462.69 creatine kinase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-030131-611]
41. col1a1b ENSDARG00000035809 995.54 7462.69 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
42. col2a1a ENSDARG00000069093, ENSDARG00000111202 995.54 7462.69 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
43. cox4i1 ENSDARG00000032970 995.54 7462.69 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
44. csrp1a ENSDARG00000006603 995.54 7462.69 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
45. eef1a1l1 ENSDARG00000020850 995.54 7462.69 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
46. eef2b ENSDARG00000100371, ENSDARG00000109247 995.54 7462.69 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
47. eif5a ENSDARG00000017235 995.54 7462.69 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
48. epdl1 ENSDARG00000076386 995.54 7462.69 ependymin-like 1 [Source:ZFIN;Acc:ZDB-GENE-090710-3]
49. fabp3 ENSDARG00000023290 995.54 7462.69 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
50. fgg ENSDARG00000037281, ENSDARG00000114705 995.54 7462.69 fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
51. hes6 ENSDARG00000019335 995.54 7462.69 hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
52. hmgn2 ENSDARG00000099572 995.54 7462.69 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
53. hp1bp3 ENSDARG00000044669 995.54 7462.69 heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
54. hspa8 ENSDARG00000068992, ENSDARG00000114726 995.54 7462.69 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
55. icn ENSDARG00000009978 995.54 7462.69 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
56. impdh1b ENSDARG00000029524 995.54 7462.69 IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
57. kars ENSDARG00000103799 995.54 7462.69 lysyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-021115-8]
58. krt4 ENSDARG00000017624, ENSDARG00000115790 995.54 7462.69 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
59. matn3a ENSDARG00000069245 995.54 7462.69 matrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
60. mt-co1 ENSDARG00000063905 995.54 7462.69 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
61. mt-co2 ENSDARG00000063908 995.54 7462.69 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
62. mt-nd2 ENSDARG00000063899 995.54 7462.69 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
63. mt-nd4 ENSDARG00000063917 995.54 7462.69 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
64. mthfd1l ENSDARG00000042221, ENSDARG00000110473 995.54 7462.69 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
65. murca murca 995.54 7462.69
66. myl1 ENSDARG00000014196 995.54 7462.69 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
67. mylz3 ENSDARG00000017441 995.54 7462.69 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
68. nutf2 ENSDARG00000056531, ENSDARG00000115472 995.54 7462.69 nuclear transport factor 2 [Source:ZFIN;Acc:ZDB-GENE-041010-77]
69. pdlim4 ENSDARG00000068973 995.54 7462.69 PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
70. ptmaa ENSDARG00000021113, ENSDARG00000110479 995.54 7462.69 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
71. ptrfa ptrfa 995.54 7462.69
72. pvalb9 ENSDARG00000071601, ENSDARG00000113946 995.54 7462.69 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
73. rnf20 ENSDARG00000016664 995.54 7462.69 ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
74. rpl18a ENSDARG00000025073 995.54 7462.69 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
75. rpl19 ENSDARG00000013307 995.54 7462.69 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
76. rpl23 ENSDARG00000053457 995.54 7462.69 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
77. rpl38 ENSDARG00000006413 995.54 7462.69 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
78. rpl5a ENSDARG00000020197 995.54 7462.69 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
79. rpl6 ENSDARG00000058451 995.54 7462.69 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
80. rpn1 ENSDARG00000059323 995.54 7462.69 ribophorin I [Source:ZFIN;Acc:ZDB-GENE-030131-4286]
81. rps26 ENSDARG00000037071 995.54 7462.69 ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-030131-8606]
82. rps29 ENSDARG00000041232 995.54 7462.69 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
83. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 995.54 7462.69 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
84. serp1 ENSDARG00000099439 995.54 7462.69 stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
85. si:ch1073-429i10.3 995.54 7462.69 si:ch1073-429i10.3, transcript variant X2
86. si:ch211-166a6.5 ENSDARG00000079745 995.54 7462.69 si:ch211-166a6.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9913]
87. si:ch211-226o13.2 995.54 7462.69 si:ch211-226o13.2
88. si:dkey-42p8.3 995.54 7462.69 si:dkey-42p8.3, transcript variant X1
89. slc22a7a ENSDARG00000056028 995.54 7462.69 solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
90. smurf2 ENSDARG00000038067 995.54 7462.69 SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
91. spna2 995.54 7462.69 spectrin alpha 2, transcript variant X12
92. st14a ENSDARG00000061173 995.54 7462.69 suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
93. sucla2 ENSDARG00000005359 995.54 7462.69 succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
94. tmem5 995.54 7462.69 transmembrane protein 5
95. twf1a ENSDARG00000115712 995.54 7462.69 twinfilin actin-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4402]
96. zgc:123194 zgc:123194 995.54 7462.69
97. zgc:66286 zgc:66286 995.54 7462.69
98. zgc:86709 ENSDARG00000110511, ENSDARG00000111417 995.54 7462.69 zgc:86709 [Source:ZFIN;Acc:ZDB-GENE-040625-35]
99. 5S_rRNA 5S_rRNA 0.00 0.00
100. 5S_rRNA_1 5S_rRNA_1 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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