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Experiment Zebrafish_40hpf_trunk2, section s25.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6024.62 45161.29
2. ckmb ENSDARG00000040565 3442.64 25806.45 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
3. tnnc2 ENSDARG00000070835, ENSDARG00000111155 3442.64 25806.45 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
4. apoc1l apoc1l 2581.98 19354.84
5. atp2a1 ENSDARG00000020574 2581.98 19354.84 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
6. krt4 ENSDARG00000017624, ENSDARG00000115790 2581.98 19354.84 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
7. mt-atp6 ENSDARG00000063911 2581.98 19354.84 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co2 ENSDARG00000063908 2581.98 19354.84 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-nd4 ENSDARG00000063917 2581.98 19354.84 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. myhz1.3 ENSDARG00000067997 2581.98 19354.84 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
11. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2581.98 19354.84 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
12. BX511252.1 BX511252.1 1721.32 12903.23
13. apoa2 ENSDARG00000015866 1721.32 12903.23 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
14. col11a1a ENSDARG00000026165, ENSDARG00000115341 1721.32 12903.23 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
15. foxp1a ENSDARG00000004843 1721.32 12903.23 forkhead box P1a [Source:ZFIN;Acc:ZDB-GENE-060929-624]
16. mt-cyb ENSDARG00000063924 1721.32 12903.23 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
17. mt-nd1 ENSDARG00000063895 1721.32 12903.23 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. mt-nd2 ENSDARG00000063899 1721.32 12903.23 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
19. mylz3 ENSDARG00000017441 1721.32 12903.23 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
20. rhoad rhoad 1721.32 12903.23
21. rpl10a ENSDARG00000042905, ENSDARG00000115649 1721.32 12903.23 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
22. rps20 ENSDARG00000036044 1721.32 12903.23 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
23. rps23 ENSDARG00000021838 1721.32 12903.23 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
24. smyd2b ENSDARG00000005629 1721.32 12903.23 SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
25. tpma ENSDARG00000033683 1721.32 12903.23 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
26. zgc:66286 zgc:66286 1721.32 12903.23
27. AL954137.2 ENSDARG00000114408 860.66 6451.61
28. CAPN2 CAPN2 860.66 6451.61
29. CR548630.1 CR548630.1 860.66 6451.61
30. SEMA5B SEMA5B 860.66 6451.61
31. SGPP1 ENSDARG00000060534 860.66 6451.61 sphingosine-1-phosphate phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-090319-2]
32. aaas ENSDARG00000102274 860.66 6451.61 achalasia, adrenocortical insufficiency, alacrimia [Source:ZFIN;Acc:ZDB-GENE-030912-4]
33. acta1a ENSDARG00000036371 860.66 6451.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
34. acta1b ENSDARG00000055618 860.66 6451.61 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 860.66 6451.61 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. actb2 ENSDARG00000037870 860.66 6451.61 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
37. apg3l apg3l 860.66 6451.61
38. apoa1a ENSDARG00000012076, ENSDARG00000110395 860.66 6451.61 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
39. arf2 arf2 860.66 6451.61
40. atp2a1l ENSDARG00000035458 860.66 6451.61 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [Source:ZFIN;Acc:ZDB-GENE-041229-2]
41. cirbp cirbp 860.66 6451.61
42. clasp2 ENSDARG00000020345 860.66 6451.61 cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
43. col1a1a ENSDARG00000012405, ENSDARG00000116113 860.66 6451.61 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
44. col9a1 col9a1 860.66 6451.61
45. cotl1 ENSDARG00000026829 860.66 6451.61 coactosin-like F-actin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8325]
46. cyt1l ENSDARG00000036832 860.66 6451.61 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
47. dbi ENSDARG00000026369 860.66 6451.61 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
48. eef1a1l1 ENSDARG00000020850 860.66 6451.61 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
49. f11r f11r 860.66 6451.61
50. fam133b ENSDARG00000013863 860.66 6451.61 family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
51. flna ENSDARG00000074201 860.66 6451.61 filamin A, alpha (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-030131-2145]
52. glulb ENSDARG00000100003, ENSDARG00000113742 860.66 6451.61 glutamate-ammonia ligase (glutamine synthase) b [Source:ZFIN;Acc:ZDB-GENE-030131-8417]
53. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 860.66 6451.61 GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
54. h2afvb ENSDARG00000116491 860.66 6451.61 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
55. hbbe3 ENSDARG00000038147, ENSDARG00000109344 860.66 6451.61 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
56. hmg20b ENSDARG00000042045, ENSDARG00000116536 860.66 6451.61 high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
57. hspe1 ENSDARG00000056167 860.66 6451.61 heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
58. klf11a ENSDARG00000030844 860.66 6451.61 Kruppel-like factor 11a [Source:ZFIN;Acc:ZDB-GENE-030131-3568]
59. kpnb1 ENSDARG00000104889 860.66 6451.61 karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
60. ldb3b ENSDARG00000099974 860.66 6451.61 LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032]
61. map7d3 ENSDARG00000060771 860.66 6451.61 MAP7 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-121129-3]
62. marcksb ENSDARG00000008803 860.66 6451.61 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
63. mt-co1 ENSDARG00000063905 860.66 6451.61 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. mt-co3 ENSDARG00000063912 860.66 6451.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
65. mt-nd3 ENSDARG00000063914 860.66 6451.61 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
66. mybpc3 ENSDARG00000011615 860.66 6451.61 myosin binding protein C, cardiac [Source:ZFIN;Acc:ZDB-GENE-070112-2362]
67. myl1 ENSDARG00000014196 860.66 6451.61 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
68. myl12.1 ENSDARG00000099766 860.66 6451.61 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
69. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 860.66 6451.61 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
70. nme2b.2 ENSDARG00000099420 860.66 6451.61 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
71. prmt5 ENSDARG00000079605, ENSDARG00000116785 860.66 6451.61 protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
72. psmb1 ENSDARG00000009640 860.66 6451.61 proteasome subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-040618-2]
73. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 860.66 6451.61 proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
74. pvalb3 ENSDARG00000022817, ENSDARG00000117131 860.66 6451.61 parvalbumin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-945]
75. rbp4 ENSDARG00000101199 860.66 6451.61 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
76. rpl14 ENSDARG00000103433 860.66 6451.61 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
77. rpl18a ENSDARG00000025073 860.66 6451.61 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
78. rpl21 ENSDARG00000010516, ENSDARG00000110263 860.66 6451.61 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
79. rpl23 ENSDARG00000053457 860.66 6451.61 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
80. rpl26 ENSDARG00000102317 860.66 6451.61 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
81. rpl35 ENSDARG00000018334 860.66 6451.61 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
82. rpl36 ENSDARG00000100588 860.66 6451.61 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
83. rpl36a ENSDARG00000058105, ENSDARG00000112656 860.66 6451.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
84. rpl39 ENSDARG00000036316, ENSDARG00000117167 860.66 6451.61 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
85. rpl4 ENSDARG00000041182 860.66 6451.61 ribosomal protein L4 [Source:ZFIN;Acc:ZDB-GENE-030131-9034]
86. rpl6 ENSDARG00000058451 860.66 6451.61 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
87. rpl9 ENSDARG00000037350, ENSDARG00000112384 860.66 6451.61 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
88. rps13 ENSDARG00000036298, ENSDARG00000112818 860.66 6451.61 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
89. rpsa ENSDARG00000019181 860.66 6451.61 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
90. rtn1a ENSDARG00000006497 860.66 6451.61 reticulon 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2426]
91. rtn4a ENSDARG00000044601, ENSDARG00000112237 860.66 6451.61 reticulon 4a [Source:ZFIN;Acc:ZDB-GENE-030710-1]
92. sdprb sdprb 860.66 6451.61
93. selt2 860.66 6451.61 selenoprotein T, 2
94. seta ENSDARG00000031495 860.66 6451.61 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
95. sfrp5 ENSDARG00000039041 860.66 6451.61 secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]
96. si:ch211-226o13.2 860.66 6451.61 si:ch211-226o13.2
97. si:ch211-71n6.4 ENSDARG00000102234 860.66 6451.61 si:ch211-71n6.4 [Source:ZFIN;Acc:ZDB-GENE-091204-213]
98. si:dkeyp-13a3.7 si:dkeyp-13a3.7 860.66 6451.61
99. snx9b ENSDARG00000069302, ENSDARG00000116107 860.66 6451.61 sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]
100. srsf1a ENSDARG00000057691, ENSDARG00000111226 860.66 6451.61 serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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