Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s23.

Sample reads: 133,404. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9480.90 71069.03
2. krt4 ENSDARG00000017624, ENSDARG00000115790 8398.84 62957.89 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 5307.24 39783.19 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoa2 ENSDARG00000015866 2988.54 22402.16 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
5. apoc1l apoc1l 2833.96 21243.43
6. tmsb4x ENSDARG00000077777 1906.48 14291.02 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. actb2 ENSDARG00000037870 1700.38 12746.09 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. apoa1a ENSDARG00000012076, ENSDARG00000110395 1700.38 12746.09 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
9. apobb apobb 1494.27 11201.08
10. apoeb ENSDARG00000040295 1494.27 11201.08 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
11. mt-atp6 ENSDARG00000063911 1185.11 8883.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. ckmb ENSDARG00000040565 927.48 6952.41 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. mt-nd2 ENSDARG00000063899 927.48 6952.41 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. actb1 ENSDARG00000037746, ENSDARG00000113649 875.95 6566.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
15. fetub ENSDARG00000053973 875.95 6566.14 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
16. mt-co2 ENSDARG00000063908 875.95 6566.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. tpma ENSDARG00000033683 824.43 6179.94 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
18. eef1a1l1 ENSDARG00000020850 669.85 5021.21 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. zgc:161979_1 zgc:161979_1 669.85 5021.21
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 618.32 4634.94 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. zgc:161979 zgc:161979 618.32 4634.94
22. col1a1a ENSDARG00000012405, ENSDARG00000116113 566.79 4248.67 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 566.79 4248.67 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. icn ENSDARG00000009978 566.79 4248.67 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
25. mt-nd4 ENSDARG00000063917 566.79 4248.67 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. rplp1 ENSDARG00000021864 566.79 4248.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
27. ckma ENSDARG00000035327, ENSDARG00000114671 515.27 3862.47 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
28. cyt1l ENSDARG00000036832 515.27 3862.47 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
29. mt-co1 ENSDARG00000063905 515.27 3862.47 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
30. mt-cyb ENSDARG00000063924 515.27 3862.47 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. bhmt ENSDARG00000013430 463.74 3476.21 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
32. mt-co3 ENSDARG00000063912 463.74 3476.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
33. myhz1.3 ENSDARG00000067997 463.74 3476.21 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
34. mylz3 ENSDARG00000017441 463.74 3476.21 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
35. ppiaa ENSDARG00000009212 412.21 3089.94 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
36. pvalb2 ENSDARG00000002768, ENSDARG00000114085 412.21 3089.94 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
37. slc43a2b ENSDARG00000061120, ENSDARG00000117188 412.21 3089.94 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
38. sparc ENSDARG00000019353 412.21 3089.94 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
39. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 412.21 3089.94 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
40. actc1b ENSDARG00000099197 360.69 2703.74 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
41. apoa4 apoa4 360.69 2703.74
42. ppiab ENSDARG00000103994 360.69 2703.74 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
43. rpl10a ENSDARG00000042905, ENSDARG00000115649 360.69 2703.74 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 360.69 2703.74 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. rpl31 ENSDARG00000053365 360.69 2703.74 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
46. sepp1a 360.69 2703.74 selenoprotein P, plasma, 1a
47. zgc:113413 zgc:113413 360.69 2703.74
48. zgc:165571 zgc:165571 360.69 2703.74
49. ATP5B 309.16 2317.47 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
50. capns1b ENSDARG00000013804 309.16 2317.47 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
51. pabpc1a ENSDARG00000017219 309.16 2317.47 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
52. rps27.1 ENSDARG00000023298 309.16 2317.47 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
53. si:dkey-151g10.6 si:dkey-151g10.6 309.16 2317.47
54. ubc ENSDARG00000102632 309.16 2317.47 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
55. zgc:112425 zgc:112425 309.16 2317.47
56. FP067396.1 FP067396.1 257.63 1931.20
57. acta1a ENSDARG00000036371 257.63 1931.20 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
58. ahcy ENSDARG00000005191 257.63 1931.20 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
59. atp2a1 ENSDARG00000020574 257.63 1931.20 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
60. col1a1b ENSDARG00000035809 257.63 1931.20 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
61. eif5a ENSDARG00000017235 257.63 1931.20 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
62. hmga1a ENSDARG00000028335 257.63 1931.20 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
63. id1 ENSDARG00000040764 257.63 1931.20 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
64. krt8 ENSDARG00000058358, ENSDARG00000109279 257.63 1931.20 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
65. mthfd1l ENSDARG00000042221, ENSDARG00000110473 257.63 1931.20 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
66. myl1 ENSDARG00000014196 257.63 1931.20 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
67. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 257.63 1931.20 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
68. rpl18a ENSDARG00000025073 257.63 1931.20 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
69. rpl23 ENSDARG00000053457 257.63 1931.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
70. rplp2 ENSDARG00000101406 257.63 1931.20 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
71. rps27a ENSDARG00000032725, ENSDARG00000114059 257.63 1931.20 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
72. tfa ENSDARG00000016771 257.63 1931.20 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
73. tkt tkt 257.63 1931.20
74. tnni2a.4 ENSDARG00000029069 257.63 1931.20 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
75. zgc:153129 zgc:153129 257.63 1931.20
76. AL954137.2 ENSDARG00000114408 206.11 1545.00
77. PRR5 PRR5 206.11 1545.00
78. a2ml ENSDARG00000056314 206.11 1545.00 alpha-2-macroglobulin-like [Source:ZFIN;Acc:ZDB-GENE-090212-1]
79. ak1 ENSDARG00000001950 206.11 1545.00 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
80. apoea ENSDARG00000102004 206.11 1545.00 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
81. arf2 arf2 206.11 1545.00
82. atp5a1 206.11 1545.00 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
83. atp5c1 206.11 1545.00 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
84. btf3 ENSDARG00000035400, ENSDARG00000116462 206.11 1545.00 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
85. btg1 ENSDARG00000027249 206.11 1545.00 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
86. ccni ENSDARG00000068214 206.11 1545.00 cyclin I [Source:ZFIN;Acc:ZDB-GENE-040426-2898]
87. cox8a ENSDARG00000095273 206.11 1545.00 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
88. ctsd ENSDARG00000057698, ENSDARG00000110172, ENSDARG00000113876 206.11 1545.00 cathepsin D [Source:ZFIN;Acc:ZDB-GENE-010131-8]
89. frem2a ENSDARG00000076856 206.11 1545.00 Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
90. gatm ENSDARG00000036239 206.11 1545.00 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
91. hdlbp hdlbp 206.11 1545.00
92. hsp90ab1 ENSDARG00000029150 206.11 1545.00 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
93. hspa8 ENSDARG00000068992, ENSDARG00000114726 206.11 1545.00 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
94. im:7150988 ENSDARG00000109310 206.11 1545.00 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
95. jupa ENSDARG00000070787, ENSDARG00000112777 206.11 1545.00 junction plakoglobin a [Source:ZFIN;Acc:ZDB-GENE-991207-22]
96. mt-nd1 ENSDARG00000063895 206.11 1545.00 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
97. mt-nd3 ENSDARG00000063914 206.11 1545.00 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
98. pcna ENSDARG00000054155 206.11 1545.00 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
99. pfn1 ENSDARG00000088091 206.11 1545.00 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
100. pmp22a ENSDARG00000105223, ENSDARG00000115339 206.11 1545.00 peripheral myelin protein 22a [Source:ZFIN;Acc:ZDB-GENE-030131-6757]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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