Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s20.

Sample reads: 133,398. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9896.03 74184.42
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7823.53 58648.17 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 6203.27 46502.08 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoc1l apoc1l 5676.24 42551.26
5. apobb apobb 4262.52 31953.48
6. apoa2 ENSDARG00000015866 3550.32 26614.55 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
7. apoeb ENSDARG00000040295 3340.22 25039.56 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. zgc:161979_1 zgc:161979_1 2492.70 18686.23
9. tmsb4x ENSDARG00000077777 2485.58 18632.86 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. zgc:161979 zgc:161979 2175.77 16310.40
11. apoa1a ENSDARG00000012076, ENSDARG00000110395 1930.06 14468.47 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
12. actb2 ENSDARG00000037870 1641.62 12306.21 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. apoa4 apoa4 1210.74 9076.17
14. ctsla ENSDARG00000007836 1022.01 7661.38 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
15. actb1 ENSDARG00000037746, ENSDARG00000113649 975.72 7314.37 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
16. rbp4 ENSDARG00000101199 804.79 6033.01 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
17. eef1a1l1 ENSDARG00000020850 797.67 5979.64 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. bhmt ENSDARG00000013430 758.49 5685.93 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
19. mt-co2 ENSDARG00000063908 673.03 5045.29 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
20. apoc2 ENSDARG00000092155 655.22 4911.78 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
21. mt-nd2 ENSDARG00000063899 630.30 4724.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. APOB APOB 551.96 4137.70
23. zgc:153129 zgc:153129 551.96 4137.70
24. cfl1l ENSDARG00000012972 491.42 3683.87 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
25. mt-nd4 ENSDARG00000063917 466.49 3496.99 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
26. col1a1a ENSDARG00000012405, ENSDARG00000116113 455.81 3416.93 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
27. pvalb9 ENSDARG00000071601, ENSDARG00000113946 452.25 3390.24 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
28. tfa ENSDARG00000016771 430.88 3230.04 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
29. slc43a2b ENSDARG00000061120, ENSDARG00000117188 427.32 3203.35 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
30. fetub ENSDARG00000053973 423.76 3176.67 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
31. ahcy ENSDARG00000005191 420.20 3149.98 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
32. mt-atp6 ENSDARG00000063911 416.64 3123.29 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
33. mt-co3 ENSDARG00000063912 416.64 3123.29 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
34. cyt1l ENSDARG00000036832 384.59 2883.03 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
35. aldob ENSDARG00000053684 381.03 2856.35 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
36. zgc:92533 zgc:92533 381.03 2856.35
37. gamt ENSDARG00000070844, ENSDARG00000109945 370.34 2776.21 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
38. pla2g12b ENSDARG00000015662 366.78 2749.52 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
39. mt-cyb ENSDARG00000063924 356.10 2669.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. icn ENSDARG00000009978 345.42 2589.40 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
41. si:dkey-151g10.6 si:dkey-151g10.6 345.42 2589.40
42. zgc:113413 zgc:113413 324.05 2429.20
43. pfn1 ENSDARG00000088091 309.81 2322.45 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
44. paics ENSDARG00000033539 306.25 2295.77 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
45. eef2b ENSDARG00000100371, ENSDARG00000109247 302.69 2269.08 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
46. pabpc1a ENSDARG00000017219 277.76 2082.19 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
47. dbi ENSDARG00000026369 274.20 2055.51 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
48. nt5c3a ENSDARG00000058597 270.64 2028.82 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
49. sepp1a 270.64 2028.82 selenoprotein P, plasma, 1a
50. hmga1a ENSDARG00000028335 267.08 2002.13 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
51. APOA4 APOA4 263.51 1975.37
52. apoea ENSDARG00000102004 263.51 1975.37 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
53. fabp2 ENSDARG00000006427, ENSDARG00000110230 259.95 1948.68 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
54. npc2 ENSDARG00000090912 242.15 1815.25 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
55. ppiaa ENSDARG00000009212 242.15 1815.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
56. fgg ENSDARG00000037281, ENSDARG00000114705 238.59 1788.56 fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 235.03 1761.87 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. krt8 ENSDARG00000058358, ENSDARG00000109279 231.47 1735.19 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
59. dao.1 ENSDARG00000035602 227.90 1708.43 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
60. gapdh ENSDARG00000043457 227.90 1708.43 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. myh9a ENSDARG00000063295 227.90 1708.43 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
62. prps1a ENSDARG00000015524 217.22 1628.36 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
63. ldhba ENSDARG00000019644 210.10 1574.99 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
64. myl12.1 ENSDARG00000099766 210.10 1574.99 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
65. mt-nd1 ENSDARG00000063895 206.54 1548.30 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
66. ckmt1 ENSDARG00000016598, ENSDARG00000113143 202.98 1521.62 creatine kinase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-030131-611]
67. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 202.98 1521.62 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
68. fgb ENSDARG00000008969 199.42 1494.93 fibrinogen beta chain [Source:ZFIN;Acc:ZDB-GENE-030131-9261]
69. fbp1b ENSDARG00000020364, ENSDARG00000111266 195.86 1468.24 fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
70. gatm ENSDARG00000036239 195.86 1468.24 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
71. icn2 ENSDARG00000055514 195.86 1468.24 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
72. zgc:136410 ENSDARG00000102241 195.86 1468.24 zgc:136410 [Source:ZFIN;Acc:ZDB-GENE-060421-6071]
73. mt-co1 ENSDARG00000063905 192.29 1441.48 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. rpl10a ENSDARG00000042905, ENSDARG00000115649 192.29 1441.48 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
75. rps23 ENSDARG00000021838 188.73 1414.79 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
76. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 181.61 1361.42 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
77. zgc:112425 zgc:112425 181.61 1361.42
78. ctsba ENSDARG00000055120 178.05 1334.73 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
79. FP067396.1 FP067396.1 167.37 1254.67
80. psap ENSDARG00000013968 167.37 1254.67 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
81. mthfd1l ENSDARG00000042221, ENSDARG00000110473 163.81 1227.98 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
82. btf3 ENSDARG00000035400, ENSDARG00000116462 160.25 1201.30 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
83. acp5a ENSDARG00000019763, ENSDARG00000111996 156.68 1174.53 acid phosphatase 5a, tartrate resistant [Source:ZFIN;Acc:ZDB-GENE-040426-2864]
84. mat1a ENSDARG00000039605, ENSDARG00000115975 156.68 1174.53 methionine adenosyltransferase I, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6127]
85. rpl27 ENSDARG00000015128 153.12 1147.85 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. prdx5 ENSDARG00000055064 149.56 1121.16 peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
87. ptmab ENSDARG00000101766 149.56 1121.16 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
88. capns1b ENSDARG00000013804 146.00 1094.47 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
89. glula ENSDARG00000099776 146.00 1094.47 glutamate-ammonia ligase (glutamine synthase) a [Source:ZFIN;Acc:ZDB-GENE-030131-688]
90. rpl18a ENSDARG00000025073 146.00 1094.47 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
91. rpl36 ENSDARG00000100588 146.00 1094.47 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
92. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 142.44 1067.78 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
93. cst3 ENSDARG00000007795 138.88 1041.10 cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
94. cotl1 ENSDARG00000026829 135.32 1014.41 coactosin-like F-actin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8325]
95. dmgdh ENSDARG00000025703 131.76 987.72 dimethylglycine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-080227-8]
96. rpl11 ENSDARG00000043509 131.76 987.72 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
97. rps27.1 ENSDARG00000023298 131.76 987.72 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. zgc:153867 131.76 987.72 zgc:153867, transcript variant X2
99. ctsd ENSDARG00000057698, ENSDARG00000110172, ENSDARG00000113876 128.20 961.04 cathepsin D [Source:ZFIN;Acc:ZDB-GENE-010131-8]
100. rpl26 ENSDARG00000102317 128.20 961.04 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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