Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s15.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12745.35 95545.54
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7163.34 53699.99 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 5527.06 41433.62
4. apoa1b ENSDARG00000101324 4989.88 37406.65 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. apoa2 ENSDARG00000015866 4889.59 36654.82 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apobb apobb 3982.84 29857.37
7. apoeb ENSDARG00000040295 2773.84 20794.10 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
8. apoa1a ENSDARG00000012076, ENSDARG00000110395 1747.56 13100.59 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
9. tmsb4x ENSDARG00000077777 1529.11 11462.98 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. zgc:161979 zgc:161979 1428.82 10711.15
11. zgc:161979_1 zgc:161979_1 1377.99 10330.10
12. actb2 ENSDARG00000037870 1306.55 9794.55 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. ctsla ENSDARG00000007836 1114.21 8352.68 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
14. actb1 ENSDARG00000037746, ENSDARG00000113649 1011.17 7580.24 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
15. apoa4 apoa4 880.65 6601.79
16. eef1a1l1 ENSDARG00000020850 759.75 5695.47 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-co2 ENSDARG00000063908 743.26 5571.85 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. rbp4 ENSDARG00000101199 718.53 5386.46 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
19. mt-nd4 ENSDARG00000063917 710.29 5324.69 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
20. APOB APOB 656.71 4923.03
21. bhmt ENSDARG00000013430 631.98 4737.64 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
22. mt-nd2 ENSDARG00000063899 610.00 4572.87 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. mt-co3 ENSDARG00000063912 604.50 4531.64 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
24. slc43a2b ENSDARG00000061120, ENSDARG00000117188 549.55 4119.70 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
25. mt-cyb ENSDARG00000063924 534.43 4006.36 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. zgc:153129 zgc:153129 519.32 3893.08
27. apoc2 ENSDARG00000092155 491.84 3687.08 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
28. mt-atp6 ENSDARG00000063911 487.72 3656.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. zgc:113413 zgc:113413 438.26 3285.42
30. APOA4 APOA4 435.52 3264.88
31. sepp1a 414.91 3110.37 selenoprotein P, plasma, 1a
32. fabp2 ENSDARG00000006427, ENSDARG00000110230 397.05 2976.49 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
33. pla2g12b ENSDARG00000015662 391.55 2935.26 phospholipase A2, group XIIB [Source:ZFIN;Acc:ZDB-GENE-040426-2771]
34. zgc:92533 zgc:92533 365.45 2739.60
35. cfl1l ENSDARG00000012972 364.07 2729.25 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
36. ahcy ENSDARG00000005191 354.46 2657.21 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
37. tfa ENSDARG00000016771 332.48 2492.44 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
38. cyt1l ENSDARG00000036832 318.74 2389.44 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
39. pvalb9 ENSDARG00000071601, ENSDARG00000113946 315.99 2368.82 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
40. pfn1 ENSDARG00000088091 313.24 2348.20 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
41. ppiaa ENSDARG00000009212 284.39 2131.93 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
42. si:dkey-151g10.6 si:dkey-151g10.6 284.39 2131.93
43. mt-nd1 ENSDARG00000063895 277.52 2080.43 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
44. aldob ENSDARG00000053684 273.40 2049.54 aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
45. gamt ENSDARG00000070844, ENSDARG00000109945 273.40 2049.54 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
46. npc2 ENSDARG00000090912 273.40 2049.54 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
47. gatm ENSDARG00000036239 266.53 1998.04 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
48. icn ENSDARG00000009978 259.66 1946.54 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
49. mt-co1 ENSDARG00000063905 258.29 1936.27 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
50. paics ENSDARG00000033539 250.04 1874.43 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
51. eef2b ENSDARG00000100371, ENSDARG00000109247 234.93 1761.15 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
52. apoea ENSDARG00000102004 232.18 1740.54 apolipoprotein Ea [Source:ZFIN;Acc:ZDB-GENE-010724-18]
53. hmga1a ENSDARG00000028335 229.44 1720.00 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
54. rpl10a ENSDARG00000042905, ENSDARG00000115649 229.44 1720.00 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
55. tpma ENSDARG00000033683 228.06 1709.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
56. nt5c3a ENSDARG00000058597 226.69 1699.38 5'-nucleotidase, cytosolic IIIA [Source:ZFIN;Acc:ZDB-GENE-030131-439]
57. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 223.94 1678.77 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
58. fetub ENSDARG00000053973 223.94 1678.77 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
59. ckmt1 ENSDARG00000016598, ENSDARG00000113143 212.95 1596.38 creatine kinase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-030131-611]
60. col1a1a ENSDARG00000012405, ENSDARG00000116113 211.58 1586.11 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
61. ldhba ENSDARG00000019644 211.58 1586.11 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
62. dao.1 ENSDARG00000035602 206.08 1544.88 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
63. prps1a ENSDARG00000015524 204.71 1534.61 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
64. mthfd1l ENSDARG00000042221, ENSDARG00000110473 197.84 1483.11 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
65. myl12.1 ENSDARG00000099766 190.97 1431.61 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
66. mat1a ENSDARG00000039605, ENSDARG00000115975 189.59 1421.26 methionine adenosyltransferase I, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6127]
67. dbi ENSDARG00000026369 188.22 1410.99 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
68. fgb ENSDARG00000008969 186.85 1400.72 fibrinogen beta chain [Source:ZFIN;Acc:ZDB-GENE-030131-9261]
69. fgg ENSDARG00000037281, ENSDARG00000114705 186.85 1400.72 fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
70. myh9a ENSDARG00000063295 184.10 1380.11 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
71. ptmab ENSDARG00000101766 184.10 1380.11 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
72. acp5a ENSDARG00000019763, ENSDARG00000111996 181.35 1359.49 acid phosphatase 5a, tartrate resistant [Source:ZFIN;Acc:ZDB-GENE-040426-2864]
73. rpl23 ENSDARG00000053457 179.98 1349.22 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
74. gapdh ENSDARG00000043457 178.60 1338.88 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
75. krt8 ENSDARG00000058358, ENSDARG00000109279 178.60 1338.88 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
76. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 175.85 1318.26 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
77. col1a1b ENSDARG00000035809 175.85 1318.26 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
78. hspa8 ENSDARG00000068992, ENSDARG00000114726 175.85 1318.26 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
79. fbp1b ENSDARG00000020364, ENSDARG00000111266 174.48 1307.99 fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
80. btf3 ENSDARG00000035400, ENSDARG00000116462 166.24 1246.22 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
81. cst3 ENSDARG00000007795 164.86 1235.87 cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
82. si:dkey-150i13.2 ENSDARG00000071052 162.12 1215.33 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
83. zgc:136410 ENSDARG00000102241 160.74 1204.99 zgc:136410 [Source:ZFIN;Acc:ZDB-GENE-060421-6071]
84. capns1b ENSDARG00000013804 159.37 1194.72 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
85. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 156.62 1174.10 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
86. actc1b ENSDARG00000099197 152.50 1143.22 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
87. a2ml ENSDARG00000056314 151.13 1132.95 alpha-2-macroglobulin-like [Source:ZFIN;Acc:ZDB-GENE-090212-1]
88. cotl1 ENSDARG00000026829 147.00 1101.99 coactosin-like F-actin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8325]
89. ctsba ENSDARG00000055120 147.00 1101.99 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
90. cd63 ENSDARG00000025147, ENSDARG00000115979 145.63 1091.72 CD63 molecule [Source:ZFIN;Acc:ZDB-GENE-030131-180]
91. rpl36a ENSDARG00000058105, ENSDARG00000112656 145.63 1091.72 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
92. atp6v0ca ENSDARG00000057853 144.26 1081.45 ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
93. pabpc1a ENSDARG00000017219 144.26 1081.45 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
94. dap ENSDARG00000000069, ENSDARG00000114419 140.13 1050.48 death-associated protein [Source:ZFIN;Acc:ZDB-GENE-000511-3]
95. rpl8 ENSDARG00000014867 137.39 1029.94 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
96. zgc:112425 zgc:112425 137.39 1029.94
97. hsp90ab1 ENSDARG00000029150 136.01 1019.60 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
98. rpl21 ENSDARG00000010516, ENSDARG00000110263 133.26 998.98 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
99. ckmb ENSDARG00000040565 131.89 988.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
100. mpc2 ENSDARG00000024478 131.89 988.71 mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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