Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s13.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11501.55 86210.41
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5504.94 41262.54 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 2726.87 20439.38 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoc1l apoc1l 2717.21 20366.98
5. apoa2 ENSDARG00000015866 2139.58 16037.32 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apobb apobb 2021.73 15153.97
7. tmsb4x ENSDARG00000077777 1805.36 13532.16 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. actb2 ENSDARG00000037870 1546.48 11591.71 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. mt-nd2 ENSDARG00000063899 1381.31 10353.67 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-co2 ENSDARG00000063908 1258.63 9434.12 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. apoeb ENSDARG00000040295 1246.07 9339.98 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
12. mt-atp6 ENSDARG00000063911 1129.19 8463.90 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-co3 ENSDARG00000063912 1029.70 7718.17 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd4 ENSDARG00000063917 1021.01 7653.03 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. actb1 ENSDARG00000037746, ENSDARG00000113649 953.39 7146.18 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
16. tpma ENSDARG00000033683 886.74 6646.60 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
17. eef1a1l1 ENSDARG00000020850 824.92 6183.23 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. apoa1a ENSDARG00000012076, ENSDARG00000110395 813.33 6096.35 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
19. zgc:161979_1 zgc:161979_1 737.02 5524.37
20. zgc:161979 zgc:161979 730.26 5473.70
21. mt-cyb ENSDARG00000063924 714.80 5357.82 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. ckmb ENSDARG00000040565 712.87 5343.35 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
23. mt-nd1 ENSDARG00000063895 603.72 4525.21 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. pvalb2 ENSDARG00000002768, ENSDARG00000114085 592.13 4438.34 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
25. ppiaa ENSDARG00000009212 550.59 4126.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. si:dkey-151g10.6 si:dkey-151g10.6 531.27 3982.16
27. apoa4 apoa4 510.99 3830.15
28. ckma ENSDARG00000035327, ENSDARG00000114671 508.09 3808.41 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
29. ctsla ENSDARG00000007836 498.43 3736.01 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
30. mt-co1 ENSDARG00000063905 447.23 3352.23 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
31. hmga1a ENSDARG00000028335 442.40 3316.03 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. atp2a1 ENSDARG00000020574 416.32 3120.55 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
33. bhmt ENSDARG00000013430 413.43 3098.88 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
34. zgc:112425 zgc:112425 410.53 3077.15
35. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 386.38 2896.13 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 347.74 2606.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 345.81 2592.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. slc43a2b ENSDARG00000061120, ENSDARG00000117188 344.84 2584.76 solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
39. zgc:153129 zgc:153129 314.90 2360.35
40. actc1b ENSDARG00000099197 313.93 2353.08 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
41. zgc:113413 zgc:113413 309.10 2316.87
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 296.55 2222.80 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. tnnc2 ENSDARG00000070835, ENSDARG00000111155 294.61 2208.26 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
44. mylz3 ENSDARG00000017441 292.68 2193.80 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
45. rpl23 ENSDARG00000053457 292.68 2193.80 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. pabpc1a ENSDARG00000017219 283.02 2121.39 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
47. ahcy ENSDARG00000005191 275.30 2063.52 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
48. cfl1l ENSDARG00000012972 275.30 2063.52 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
49. APOB APOB 264.67 1983.85
50. acta1b ENSDARG00000055618 259.84 1947.64 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
51. rbp4 ENSDARG00000101199 252.11 1889.70 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
52. zgc:92533 zgc:92533 250.18 1875.24
53. rpl8 ENSDARG00000014867 244.39 1831.84 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
54. btf3 ENSDARG00000035400, ENSDARG00000116462 242.45 1817.30 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
55. sepp1a 236.66 1773.90 selenoprotein P, plasma, 1a
56. col1a1b ENSDARG00000035809 235.69 1766.63 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
57. pfn1 ENSDARG00000088091 232.79 1744.89 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
58. col1a1a ENSDARG00000012405, ENSDARG00000116113 231.83 1737.69 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
59. cyt1l ENSDARG00000036832 230.86 1730.42 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
60. rplp1 ENSDARG00000021864 230.86 1730.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
61. eif5a ENSDARG00000017235 229.90 1723.23 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
62. tpm3 ENSDARG00000005162 223.13 1672.48 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. apoc2 ENSDARG00000092155 219.27 1643.55 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
64. ATP5B 218.30 1636.28 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
65. pvalb1 ENSDARG00000037789 216.37 1621.81 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
66. pvalb9 ENSDARG00000071601, ENSDARG00000113946 216.37 1621.81 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
67. ptmab ENSDARG00000101766 212.51 1592.88 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
68. fabp2 ENSDARG00000006427, ENSDARG00000110230 208.64 1563.87 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
69. rpl21 ENSDARG00000010516, ENSDARG00000110263 205.75 1542.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
70. rps27a ENSDARG00000032725, ENSDARG00000114059 205.75 1542.21 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
71. rps23 ENSDARG00000021838 204.78 1534.94 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
72. myl12.1 ENSDARG00000099766 203.82 1527.74 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
73. rpl11 ENSDARG00000043509 203.82 1527.74 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
74. rpl18a ENSDARG00000025073 200.92 1506.01 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
75. rpl26 ENSDARG00000102317 195.12 1462.53 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
76. APOA4 APOA4 194.16 1455.34
77. krt8 ENSDARG00000058358, ENSDARG00000109279 193.19 1448.06 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
78. myhz1.3 ENSDARG00000067997 191.26 1433.60 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
79. rpl27 ENSDARG00000015128 186.43 1397.39 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
80. gatm ENSDARG00000036239 182.56 1368.39 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
81. AL954137.2 ENSDARG00000114408 181.60 1361.19
82. hsp90ab1 ENSDARG00000029150 181.60 1361.19 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
83. ldhba ENSDARG00000019644 181.60 1361.19 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
84. npc2 ENSDARG00000090912 181.60 1361.19 Niemann-Pick disease, type C2 [Source:ZFIN;Acc:ZDB-GENE-021206-13]
85. rpl36 ENSDARG00000100588 180.63 1353.92 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. rps14 ENSDARG00000036629 180.63 1353.92 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
87. gamt ENSDARG00000070844, ENSDARG00000109945 176.77 1324.99 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
88. gapdh ENSDARG00000043457 174.84 1310.52 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
89. RPL29 ENSDARG00000077717 171.94 1288.78 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. hmgn2 ENSDARG00000099572 171.94 1288.78 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
91. rpl9 ENSDARG00000037350, ENSDARG00000112384 170.01 1274.32 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
92. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 169.04 1267.05 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
93. cfl1 ENSDARG00000021124 169.04 1267.05 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
94. rps27.1 ENSDARG00000023298 168.08 1259.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
95. rpl36a ENSDARG00000058105, ENSDARG00000112656 167.11 1252.58 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
96. tfa ENSDARG00000016771 166.14 1245.31 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
97. icn ENSDARG00000009978 164.21 1230.84 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
98. mt-nd3 ENSDARG00000063914 163.25 1223.65 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
99. rps26l ENSDARG00000030408 163.25 1223.65 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
100. rps2 ENSDARG00000077291 161.31 1209.11 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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