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Experiment Zebrafish_40hpf_trunk2, section s11.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9095.95 68180.14
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3078.19 23073.06 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2828.20 21199.22 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2121.38 15901.14 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-nd2 ENSDARG00000063899 2014.90 15103.00 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1896.79 14217.69 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mt-atp6 ENSDARG00000063911 1674.64 12552.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co2 ENSDARG00000063908 1658.43 12431.02 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1645.27 12332.38 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. mt-nd4 ENSDARG00000063917 1534.50 11502.09 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. atp2a1 ENSDARG00000020574 1396.81 10470.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. mt-co3 ENSDARG00000063912 1390.08 10419.56 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. mylz3 ENSDARG00000017441 1253.31 9394.38 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. actc1b ENSDARG00000099197 1151.72 8632.90 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1151.41 8630.58 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. actb2 ENSDARG00000037870 1135.20 8509.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. apoa1b ENSDARG00000101324 1117.45 8376.02 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
18. mt-cyb ENSDARG00000063924 1039.73 7793.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
19. apoc1l apoc1l 1019.53 7642.05
20. eef1a1l1 ENSDARG00000020850 1014.64 7605.39 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. apoa2 ENSDARG00000015866 943.65 7073.28 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
22. acta1b ENSDARG00000055618 943.04 7068.71 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
23. mt-nd1 ENSDARG00000063895 909.99 6820.97 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. tnnc2 ENSDARG00000070835, ENSDARG00000111155 863.79 6474.67 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
25. apobb apobb 863.18 6470.10
26. tmsb4x ENSDARG00000077777 852.16 6387.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
27. myhz1.3 ENSDARG00000067997 699.78 5245.31 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
28. mt-co1 ENSDARG00000063905 641.03 4804.94 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 605.23 4536.60 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. pvalb1 ENSDARG00000037789 602.79 4518.31 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
31. myl1 ENSDARG00000014196 561.17 4206.34 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
32. tnnt3a ENSDARG00000030270 559.34 4192.62 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
33. tnni2a.4 ENSDARG00000029069 544.65 4082.51 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
34. ppiaa ENSDARG00000009212 517.11 3876.08 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. si:dkey-151g10.6 si:dkey-151g10.6 499.36 3743.03
36. apoeb ENSDARG00000040295 495.08 3710.95 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
37. tnnt3b ENSDARG00000068457 463.26 3472.44 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 451.02 3380.69 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. si:ch211-226o13.2 410.63 3077.94 si:ch211-226o13.2
40. acta1a ENSDARG00000036371 395.02 2960.94 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
41. ATP5B 368.71 2763.72 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
42. zgc:66286 zgc:66286 366.87 2749.93
43. zgc:112425 zgc:112425 356.16 2669.65
44. rpl23 ENSDARG00000053457 355.55 2665.08 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. atp1b1a ENSDARG00000013144 355.25 2662.83 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 345.45 2589.38 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. aldoab ENSDARG00000034470 338.42 2536.68 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
48. mylpfb ENSDARG00000002589 336.28 2520.64 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
49. apoa1a ENSDARG00000012076, ENSDARG00000110395 326.79 2449.51 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
50. eef2b ENSDARG00000100371, ENSDARG00000109247 316.08 2369.23 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 311.80 2337.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. hmga1a ENSDARG00000028335 305.06 2286.63 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
53. col1a1b ENSDARG00000035809 301.39 2259.12 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
54. eif5a ENSDARG00000017235 299.56 2245.40 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. zgc:161979 zgc:161979 299.25 2243.08
56. rpl21 ENSDARG00000010516, ENSDARG00000110263 284.87 2135.29 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
57. gapdh ENSDARG00000043457 281.20 2107.78 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
58. rpl8 ENSDARG00000014867 276.91 2075.62 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. col1a1a ENSDARG00000012405, ENSDARG00000116113 271.71 2036.65 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
60. tpm3 ENSDARG00000005162 269.88 2022.93 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
61. rps23 ENSDARG00000021838 261.31 1958.69 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. rpl27 ENSDARG00000015128 259.17 1942.65 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
63. atp5a1 257.03 1926.61 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
64. rpl26 ENSDARG00000102317 256.11 1919.71 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. rplp1 ENSDARG00000021864 256.11 1919.71 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. rpl9 ENSDARG00000037350, ENSDARG00000112384 254.88 1910.49 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
67. rpl36a ENSDARG00000058105, ENSDARG00000112656 247.54 1855.48 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
68. rps27a ENSDARG00000032725, ENSDARG00000114059 246.93 1850.90 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
69. rps2 ENSDARG00000077291 244.48 1832.54 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
70. zgc:161979_1 zgc:161979_1 244.48 1832.54
71. ctsla ENSDARG00000007836 231.63 1736.22 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
72. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 228.88 1715.61 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
73. rpl19 ENSDARG00000013307 228.57 1713.28 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
74. atp5g1 221.23 1658.26 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
75. rps9 ENSDARG00000011405, ENSDARG00000113248 219.39 1644.47 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
76. rpl11 ENSDARG00000043509 217.25 1628.43 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
77. mt-nd3 ENSDARG00000063914 216.64 1623.86 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
78. krt8 ENSDARG00000058358, ENSDARG00000109279 215.11 1612.39 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
79. rpl18a ENSDARG00000025073 213.88 1603.17 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
80. myl10 ENSDARG00000062592 208.68 1564.19 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
81. atp5g3b 205.31 1538.93 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
82. zgc:113413 zgc:113413 200.42 1502.28
83. rps14 ENSDARG00000036629 193.99 1454.08 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
84. nme2b.2 ENSDARG00000099420 192.77 1444.94 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
85. ttna ttna 192.46 1442.61
86. rpl7 ENSDARG00000007320 187.57 1405.96 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
87. COX5B_1 ENSDARG00000015978 185.73 1392.17 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
88. rps26l ENSDARG00000030408 185.12 1387.60 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
89. hsp90ab1 ENSDARG00000029150 184.20 1380.70 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
90. rplp0 ENSDARG00000051783 181.14 1357.76 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 179.31 1344.05 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. rps27.1 ENSDARG00000023298 179.31 1344.05 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
93. rps4x ENSDARG00000014690 177.47 1330.25 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
94. rps12 ENSDARG00000036875, ENSDARG00000115157 176.55 1323.36 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
95. cox8a ENSDARG00000095273 170.13 1275.24 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
96. ptmab ENSDARG00000101766 169.82 1272.91 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
97. rps19 ENSDARG00000030602 167.68 1256.87 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
98. cycsb ENSDARG00000044562 166.15 1245.40 cytochrome c, somatic b [Source:ZFIN;Acc:ZDB-GENE-040625-38]
99. rps20 ENSDARG00000036044 164.01 1229.36 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
100. rpl18 ENSDARG00000029533 163.70 1227.04 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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