Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s1.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13593.76 101899.79
2. tpma ENSDARG00000033683 3864.00 28964.82 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 2685.13 20127.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2634.35 19747.27 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. atp2a1 ENSDARG00000020574 2012.98 15089.44 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1932.54 14486.46 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. actc1b ENSDARG00000099197 1917.57 14374.24 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. krt4 ENSDARG00000017624, ENSDARG00000115790 1775.39 13308.45 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
9. mylz3 ENSDARG00000017441 1694.41 12701.42 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1474.46 11052.66 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
11. mt-atp6 ENSDARG00000063911 1340.83 10050.96 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-co2 ENSDARG00000063908 1310.63 9824.58 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. acta1b ENSDARG00000055618 1246.49 9343.78 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1230.45 9223.54 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mt-nd2 ENSDARG00000063899 1217.89 9129.39 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-nd4 ENSDARG00000063917 1086.13 8141.71 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. eef1a1l1 ENSDARG00000020850 1075.71 8063.60 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. mt-co3 ENSDARG00000063912 995.26 7460.54 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. myhz1.3 ENSDARG00000067997 930.86 6977.79 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. pvalb1 ENSDARG00000037789 802.04 6012.15 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
21. myl1 ENSDARG00000014196 779.86 5845.89 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
22. tnni2a.4 ENSDARG00000029069 763.29 5721.68 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
23. mt-cyb ENSDARG00000063924 699.41 5242.83 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. si:dkey-151g10.6 si:dkey-151g10.6 698.88 5238.85
25. mt-nd1 ENSDARG00000063895 676.43 5070.57 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. hmga1a ENSDARG00000028335 653.44 4898.23 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
27. tnnt3a ENSDARG00000030270 651.31 4882.27 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
28. tnnt3b ENSDARG00000068457 606.14 4543.67 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. zgc:112425 zgc:112425 588.23 4409.41
30. actb2 ENSDARG00000037870 581.02 4355.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
31. si:ch211-226o13.2 528.10 3958.68 si:ch211-226o13.2
32. mylpfb ENSDARG00000002589 507.79 3806.43 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 487.74 3656.13 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. ppiaa ENSDARG00000009212 486.94 3650.14 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
35. acta1a ENSDARG00000036371 428.95 3215.44 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
36. ptmab ENSDARG00000101766 413.45 3099.25 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
37. rpl23 ENSDARG00000053457 413.18 3097.23 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. tmsb4x ENSDARG00000077777 369.88 2772.65 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
39. hmgn2 ENSDARG00000099572 368.55 2762.68 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
40. mt-co1 ENSDARG00000063905 367.21 2752.63 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
41. aldoab ENSDARG00000034470 364.81 2734.64 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
42. gapdh ENSDARG00000043457 337.28 2528.27 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 321.51 2410.06 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 321.24 2408.04 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. rpl8 ENSDARG00000014867 321.24 2408.04 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. hspa8 ENSDARG00000068992, ENSDARG00000114726 316.43 2371.98 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
47. eif5a ENSDARG00000017235 314.03 2353.99 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
48. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 310.02 2323.93 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
49. nme2b.2 ENSDARG00000099420 306.81 2299.87 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
50. ttna ttna 305.47 2289.82
51. btf3 ENSDARG00000035400, ENSDARG00000116462 296.39 2221.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. AL954137.2 ENSDARG00000114408 294.52 2207.74
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 289.17 2167.64 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. rps23 ENSDARG00000021838 284.90 2135.63 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. ATP5B 280.35 2101.52 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
56. rplp1 ENSDARG00000021864 275.27 2063.44 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
57. zgc:66286 zgc:66286 272.87 2045.45
58. rpl26 ENSDARG00000102317 257.37 1929.26 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. rps2 ENSDARG00000077291 257.37 1929.26 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
60. rpl9 ENSDARG00000037350, ENSDARG00000112384 255.76 1917.20 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
61. myhz2 ENSDARG00000012944 255.50 1915.25 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
62. fabp3 ENSDARG00000023290 247.21 1853.10 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
63. rpl27 ENSDARG00000015128 245.61 1841.11 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 240.26 1801.01 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 236.52 1772.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. col1a1b ENSDARG00000035809 235.72 1766.97 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
67. ttnb ttnb 233.32 1748.98
68. tpm3 ENSDARG00000005162 229.57 1720.87 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
69. rpl18a ENSDARG00000025073 226.10 1694.86 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
70. rpl11 ENSDARG00000043509 219.95 1648.76 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
71. rpl19 ENSDARG00000013307 216.75 1624.77 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
72. zgc:123194 zgc:123194 207.66 1556.63
73. col1a1a ENSDARG00000012405, ENSDARG00000116113 206.32 1546.59 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
74. rps14 ENSDARG00000036629 206.32 1546.59 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
75. hsp90ab1 ENSDARG00000029150 205.52 1540.59 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
76. myl10 ENSDARG00000062592 204.99 1536.62 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
77. pkmb ENSDARG00000099860 202.58 1518.55 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
78. rplp0 ENSDARG00000051783 202.31 1516.53 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. rps12 ENSDARG00000036875, ENSDARG00000115157 202.31 1516.53 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
80. fkbp1aa ENSDARG00000022684 202.05 1514.58 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
81. rps26l ENSDARG00000030408 201.24 1508.51 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
82. rps5 ENSDARG00000043453 195.36 1464.43 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. rpl7 ENSDARG00000007320 193.49 1450.41 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
84. id1 ENSDARG00000040764 192.96 1446.44 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
85. rps9 ENSDARG00000011405, ENSDARG00000113248 192.96 1446.44 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
86. si:dkeyp-86f7.3 si:dkeyp-86f7.3 192.43 1442.47
87. ak1 ENSDARG00000001950 183.87 1378.30 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
88. h3f3a 183.34 1374.33 H3 histone, family 3A, transcript variant X1
89. rps20 ENSDARG00000036044 179.33 1344.27 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
90. pcna ENSDARG00000054155 177.99 1334.23 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
91. rplp2 ENSDARG00000101406 177.19 1328.23 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
92. rplp2l ENSDARG00000011201 176.39 1322.23 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 173.45 1300.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. hnrnpab hnrnpab 171.85 1288.20
95. rps27.1 ENSDARG00000023298 168.10 1260.09 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. pvalb4 ENSDARG00000024433 167.84 1258.14 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
97. atp5a1 166.23 1246.07 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
98. rpl18 ENSDARG00000029533 166.23 1246.07 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
99. rpl36 ENSDARG00000100588 164.90 1236.10 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
100. cirbp cirbp 162.76 1220.06
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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