Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s9.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 6881.18 51584.90 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tpma ENSDARG00000033683 5174.62 38791.64 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. AC024175.4 AC024175.4 4735.23 35497.74
4. pvalb2 ENSDARG00000002768, ENSDARG00000114085 3879.98 29086.34 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
5. ckmb ENSDARG00000040565 1953.72 14646.10 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1639.87 12293.32 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. pvalb1 ENSDARG00000037789 1463.33 10969.88 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
8. mt-co2 ENSDARG00000063908 1443.71 10822.80 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1357.41 10175.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
10. acta1b ENSDARG00000055618 1314.25 9852.30 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
11. mt-nd4 ENSDARG00000063917 1278.94 9587.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. tmsb4x ENSDARG00000077777 1267.17 9499.36 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1118.09 8381.78 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. actc1b ENSDARG00000099197 1016.09 7617.14 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. mt-atp6 ENSDARG00000063911 965.09 7234.82 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. atp2a1 ENSDARG00000020574 953.32 7146.58 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 906.24 6793.65 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
18. tnnt3b ENSDARG00000068457 804.24 6029.00 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
19. mt-co3 ENSDARG00000063912 776.78 5823.15 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tnni2a.4 ENSDARG00000029069 733.63 5499.67 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
21. mt-nd2 ENSDARG00000063899 647.32 4852.65 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. si:ch211-226o13.2 639.47 4793.80 si:ch211-226o13.2
23. actb2 ENSDARG00000037870 631.63 4735.03 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
24. si:ch211-251b21.1 ENSDARG00000007275 572.78 4293.86 si:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
25. mt-cyb ENSDARG00000063924 545.32 4088.00 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. aldoab ENSDARG00000034470 537.47 4029.15 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
27. cyt1l ENSDARG00000036832 498.24 3735.07 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
28. eef1a1l1 ENSDARG00000020850 494.32 3705.68 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
29. ppiaa ENSDARG00000009212 490.39 3676.22 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
30. mylpfb ENSDARG00000002589 486.47 3646.83 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
31. gapdh ENSDARG00000043457 474.70 3558.60 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
32. zgc:112425 zgc:112425 474.70 3558.60
33. si:dkey-151g10.6 si:dkey-151g10.6 435.47 3264.51
34. tnnt3a ENSDARG00000030270 415.85 3117.43 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
35. icn ENSDARG00000009978 411.93 3088.04 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
36. gch2 ENSDARG00000099101 388.39 2911.57 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
37. cfl1l ENSDARG00000012972 384.47 2882.19 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
38. myhz1.2 ENSDARG00000067995 380.54 2852.73 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
39. mylz3 ENSDARG00000017441 380.54 2852.73 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
40. hmga1a ENSDARG00000028335 349.16 2617.48 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
41. myhz1.3 ENSDARG00000067997 341.31 2558.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
42. mt-nd1 ENSDARG00000063895 325.62 2441.02 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
43. zgc:92533 zgc:92533 321.70 2411.63
44. pkmb ENSDARG00000099860 317.77 2382.17 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
45. zgc:66286 zgc:66286 313.85 2352.78
46. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 306.00 2293.93 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
47. rps26l ENSDARG00000030408 306.00 2293.93 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. actb1 ENSDARG00000037746, ENSDARG00000113649 290.31 2176.31 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
49. col1a1a ENSDARG00000012405, ENSDARG00000116113 290.31 2176.31 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
50. si:dkeyp-86f7.3 si:dkeyp-86f7.3 290.31 2176.31
51. ttnb ttnb 262.85 1970.46
52. ttna ttna 251.08 1882.23
53. pvalb4 ENSDARG00000024433 239.31 1793.99 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
54. acta1a ENSDARG00000036371 235.39 1764.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
55. rps20 ENSDARG00000036044 231.47 1735.22 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. aldoaa ENSDARG00000011665 227.54 1705.76 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
57. cox4i1 ENSDARG00000032970 223.62 1676.37 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
58. myl1 ENSDARG00000014196 223.62 1676.37 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
59. fabp3 ENSDARG00000023290 219.70 1646.99 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
60. actn3a ENSDARG00000013755, ENSDARG00000111128 207.93 1558.75 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
61. hspa8 ENSDARG00000068992, ENSDARG00000114726 207.93 1558.75 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
62. pfn1 ENSDARG00000088091 207.93 1558.75 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
63. rpl36 ENSDARG00000100588 207.93 1558.75 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. h3f3a 204.00 1529.29 H3 histone, family 3A, transcript variant X1
65. hmgn2 ENSDARG00000099572 204.00 1529.29 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
66. tnw 200.08 1499.90 tenascin W, transcript variant X2
67. eef2b ENSDARG00000100371, ENSDARG00000109247 196.16 1470.52 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
68. icn2 ENSDARG00000055514 196.16 1470.52 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
69. h3f3d ENSDARG00000045248 192.23 1441.06 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
70. id1 ENSDARG00000040764 188.31 1411.67 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
71. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 180.46 1352.82 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
72. eif5a ENSDARG00000017235 176.54 1323.44 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. mt-nd3 ENSDARG00000063914 176.54 1323.44 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
74. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 176.54 1323.44 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
75. ptmab ENSDARG00000101766 172.62 1294.05 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
76. calm2a ENSDARG00000031427, ENSDARG00000111871 168.69 1264.59 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
77. si:ch1073-429i10.3 168.69 1264.59 si:ch1073-429i10.3, transcript variant X2
78. RPL29 ENSDARG00000077717 164.77 1235.20 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. rpl27 ENSDARG00000015128 164.77 1235.20 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
80. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 160.85 1205.82 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
81. hnrnpab hnrnpab 160.85 1205.82
82. myl10 ENSDARG00000062592 160.85 1205.82 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
83. pbx4 ENSDARG00000052150 160.85 1205.82 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
84. rps27a ENSDARG00000032725, ENSDARG00000114059 160.85 1205.82 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
85. atp5g3b 156.93 1176.43 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
86. ptmaa ENSDARG00000021113, ENSDARG00000110479 156.93 1176.43 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
87. rpl9 ENSDARG00000037350, ENSDARG00000112384 156.93 1176.43 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
88. ATP5B 153.00 1146.97 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. col1a1b ENSDARG00000035809 153.00 1146.97 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
90. rps6 ENSDARG00000019778 153.00 1146.97 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
91. zgc:113413 zgc:113413 153.00 1146.97
92. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 149.08 1117.58 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
93. rpl19 ENSDARG00000013307 149.08 1117.58 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
94. rpl8 ENSDARG00000014867 149.08 1117.58 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
95. rps27.1 ENSDARG00000023298 149.08 1117.58 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. anxa1a ENSDARG00000026726 145.16 1088.19 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
97. casq2 ENSDARG00000008982 145.16 1088.19 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
98. hoxb9a ENSDARG00000056023 145.16 1088.19 homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
99. rps23 ENSDARG00000021838 145.16 1088.19 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
100. AL954137.2 ENSDARG00000114408 141.23 1058.73
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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