Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s6.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 21823.08 163587.31 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. AC024175.4 AC024175.4 10911.54 81793.65
3. zgc:92533 zgc:92533 2463.90 18469.56
4. actb2 ENSDARG00000037870 1877.25 14071.99 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. cyt1l ENSDARG00000036832 1759.93 13192.56 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
6. mt-nd4 ENSDARG00000063917 1525.27 11433.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. atp2a1 ENSDARG00000020574 1407.94 10554.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
8. actc1b ENSDARG00000099197 1173.28 8794.99 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1173.28 8794.99 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. tpma ENSDARG00000033683 1173.28 8794.99 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
11. CU914813.1 CU914813.1 1055.96 7915.55
12. mt-co2 ENSDARG00000063908 1055.96 7915.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1055.96 7915.55 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1055.96 7915.55 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. eef1a1l1 ENSDARG00000020850 938.63 7036.03 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. hmga1a ENSDARG00000028335 938.63 7036.03 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. icn2 ENSDARG00000055514 938.63 7036.03 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
18. mt-atp6 ENSDARG00000063911 938.63 7036.03 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-co3 ENSDARG00000063912 938.63 7036.03 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. mt-nd2 ENSDARG00000063899 821.30 6156.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
21. myhz1.3 ENSDARG00000067997 821.30 6156.52 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 821.30 6156.52 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
23. apoc1l apoc1l 703.97 5277.01
24. ckmb ENSDARG00000040565 703.97 5277.01 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 703.97 5277.01 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. icn ENSDARG00000009978 703.97 5277.01 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
27. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 703.97 5277.01 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
28. tmsb4x ENSDARG00000077777 703.97 5277.01 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 586.64 4397.49 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 586.64 4397.49 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. zgc:165571 zgc:165571 586.64 4397.49
32. hbbe1.1 ENSDARG00000113599 469.31 3517.98 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
33. mylz3 ENSDARG00000017441 469.31 3517.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
34. pfn1 ENSDARG00000088091 469.31 3517.98 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
35. rpl26 ENSDARG00000102317 469.31 3517.98 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 469.31 3517.98 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. rplp2 ENSDARG00000101406 469.31 3517.98 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
38. sepw1 469.31 3517.98 selenoprotein W, 1
39. tnnt3b ENSDARG00000068457 469.31 3517.98 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
40. vdac2 ENSDARG00000013623 469.31 3517.98 voltage-dependent anion channel 2 [Source:ZFIN;Acc:ZDB-GENE-030131-845]
41. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 469.31 3517.98 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
42. zgc:66286 zgc:66286 469.31 3517.98
43. CU571255.1 CU571255.1 351.99 2638.54
44. DUSP13_1 DUSP13_1 351.99 2638.54
45. FP067396.1 FP067396.1 351.99 2638.54
46. acta1b ENSDARG00000055618 351.99 2638.54 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
47. adss ENSDARG00000002071 351.99 2638.54 adenylosuccinate synthase [Source:ZFIN;Acc:ZDB-GENE-050417-337]
48. axin2 ENSDARG00000100149 351.99 2638.54 axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 351.99 2638.54 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 351.99 2638.54 F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
51. gpx1a ENSDARG00000018146, ENSDARG00000114736 351.99 2638.54 glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
52. hspa8 ENSDARG00000068992, ENSDARG00000114726 351.99 2638.54 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
53. krt5 ENSDARG00000058371, ENSDARG00000112017 351.99 2638.54 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
54. krt8 ENSDARG00000058358, ENSDARG00000109279 351.99 2638.54 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
55. mob4 ENSDARG00000056085 351.99 2638.54 MOB family member 4, phocein [Source:ZFIN;Acc:ZDB-GENE-040801-174]
56. mt-cyb ENSDARG00000063924 351.99 2638.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
57. ndufs8a ENSDARG00000051986 351.99 2638.54 NADH:ubiquinone oxidoreductase core subunit S8a [Source:ZFIN;Acc:ZDB-GENE-040426-2153]
58. osgn1 ENSDARG00000052279 351.99 2638.54 oxidative stress induced growth inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-864]
59. pvalb1 ENSDARG00000037789 351.99 2638.54 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
60. rpl11 ENSDARG00000043509 351.99 2638.54 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. rpl17 ENSDARG00000057556 351.99 2638.54 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
62. rpl23 ENSDARG00000053457 351.99 2638.54 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 351.99 2638.54 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. rpl38 ENSDARG00000006413 351.99 2638.54 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
65. rpl8 ENSDARG00000014867 351.99 2638.54 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
66. rps2 ENSDARG00000077291 351.99 2638.54 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 351.99 2638.54 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
68. slc25a22 351.99 2638.54 solute carrier family 25 (mitochondrial carrier: glutamate), member 22, transcript variant X2
69. stmn1a ENSDARG00000004169 351.99 2638.54 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
70. zgc:113413 zgc:113413 351.99 2638.54
71. CABZ01035189.1 CABZ01035189.1 234.66 1759.03
72. KRT78 KRT78 234.66 1759.03
73. PHYHIP ENSDARG00000116497 234.66 1759.03 phytanoyl-CoA 2-hydroxylase interacting protein [Source:NCBI gene;Acc:100002455]
74. TRIM14 TRIM14 234.66 1759.03
75. anxa1a ENSDARG00000026726 234.66 1759.03 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
76. anxa2a ENSDARG00000003216 234.66 1759.03 annexin A2a [Source:ZFIN;Acc:ZDB-GENE-030131-4282]
77. apoeb ENSDARG00000040295 234.66 1759.03 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
78. atp5a1 234.66 1759.03 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
79. cdc42se1 ENSDARG00000023724 234.66 1759.03 CDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
80. cfl1l ENSDARG00000012972 234.66 1759.03 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
81. cltca ENSDARG00000043493, ENSDARG00000115370 234.66 1759.03 clathrin, heavy chain a (Hc) [Source:ZFIN;Acc:ZDB-GENE-030131-2299]
82. col18a1 col18a1 234.66 1759.03
83. col1a1a ENSDARG00000012405, ENSDARG00000116113 234.66 1759.03 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
84. col1a1b ENSDARG00000035809 234.66 1759.03 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
85. col4a5 ENSDARG00000052063 234.66 1759.03 collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
86. cox8a ENSDARG00000095273 234.66 1759.03 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
87. dynll1 ENSDARG00000058454 234.66 1759.03 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
88. faua ENSDARG00000099022 234.66 1759.03 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
89. fth1a ENSDARG00000015551 234.66 1759.03 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
90. id1 ENSDARG00000040764 234.66 1759.03 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
91. irs2 irs2 234.66 1759.03
92. kdm1a ENSDARG00000060679 234.66 1759.03 lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
93. krt17 ENSDARG00000094041 234.66 1759.03 keratin 17 [Source:ZFIN;Acc:ZDB-GENE-060503-86]
94. lasp1 ENSDARG00000057867 234.66 1759.03 LIM and SH3 protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1936]
95. ldhba ENSDARG00000019644 234.66 1759.03 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
96. mt-co1 ENSDARG00000063905 234.66 1759.03 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
97. mt-nd1 ENSDARG00000063895 234.66 1759.03 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
98. mylpfb ENSDARG00000002589 234.66 1759.03 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
99. nme2b.2 ENSDARG00000099420 234.66 1759.03 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
100. oaz1b ENSDARG00000104782 234.66 1759.03 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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